RNA id: TU12836


Basic Information

Item Value
RNA id TU12836
length 354
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G10307
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 1696805 ~ 1705596 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAAGGGGGGTGACAATTTCCCACATCTGAAGAAAATGGCACTGGGCTTCATAACCATAACCAACTTCACTCTTGACATCACCAGATTGGTCAGCCAAAACCAAGCTCAGCAATCTCACAGATTCGAGTCCAGCCCCTGGTGTGCTCCAGTCCTCTGCCGGTTTTGACTCTGCTCGTCTCGACCCTGCTCTGCCTGTTCCCTCTTGACTGATTGCTCCGCTGCCGACCTATGACTGGATCTGGTTTTCCTGGGTTCCTGGGCACTGCCAGCCTGAGTCTCTCGAGGCTCGGTGACCCGTTATCTGCATTTTCTGTTCATTGCCAGtttattcaataaaaactgttaaCAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12826 lncRNA downstream 163150 1533401 ~ 1533655 (-) True G10298
TU12748 lncRNA downstream 1373805 322629 ~ 323000 (-) True G10233
TU12743 lncRNA downstream 1425282 270921 ~ 271523 (-) True G10229
TU12722 lncRNA downstream 1495689 200279 ~ 201116 (-) True G10214
TU12843 lncRNA upstream 138332 1843928 ~ 1844160 (-) True G10314
TU12848 lncRNA upstream 202329 1907925 ~ 1908294 (-) True G10319
TU12850 lncRNA upstream 212833 1918429 ~ 1919336 (-) True G10321
TU12853 lncRNA upstream 381675 2087271 ~ 2087550 (-) True G10324
TU12872 lncRNA upstream 544805 2250401 ~ 2250641 (-) True G10343
AMCG00016019 mRNA downstream 236973 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016020 mRNA downstream 355594 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016018 mRNA downstream 384720 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016010 mRNA downstream 1499907 187079 ~ 196898 (-) True AMCG00016010
AMCG00016012 mRNA downstream 1515268 159706 ~ 181537 (-) True AMCG00016012
AMCG00016023 mRNA upstream 757475 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016022 mRNA upstream 813947 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016024 mRNA upstream 827021 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016026 mRNA upstream 890418 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016027 mRNA upstream 901112 2606708 ~ 2671709 (-) True AMCG00016027
TU12954 other upstream 1004803 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 1328826 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 1823656 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 2202163 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 6485950 8191546 ~ 8194432 (-) False G11326

Expression Profile