RNA id: TU12888


Basic Information

Item Value
RNA id TU12888
length 397
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G10356
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2425085 ~ 2425481 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catttaaatagctatttgagtcttaagaaacttgacccttggaacgaacagggccctgctttcctcaaagactttgtcttcaaataaGTACAGTGAGAGACCATGCTTgccaagaagattttgtgcacaaccttggagccgtcaaaccagtggaaaatctgtttggaaaagactctacattcgtgaaaccccaacttccaggtgcatcgactgagtggaagttcttggacaaagccgaaccggactgcctttgttccaaaccacacggaccttgtgccgtgtgctgttatctgagcacAAAGCCAGAGAAGCCTCTCTGcaacgaagttcagataagttcaTGATTGGAGTTcatgattcatgacatttgagaaatcaattagaaatgttaatctgN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12882 lncRNA upstream 8299 2366631 ~ 2416786 (+) True G10352
TU12874 lncRNA upstream 167353 2257313 ~ 2257732 (+) True G10345
TU12871 lncRNA upstream 174458 2250426 ~ 2250627 (+) True G10342
TU12789 lncRNA upstream 1227202 1197629 ~ 1197883 (+) True G10263
TU12749 lncRNA upstream 2076190 348522 ~ 348895 (+) True G10234
TU12904 lncRNA downstream 63280 2488761 ~ 2489684 (+) True G10372
TU12921 lncRNA downstream 116243 2541724 ~ 2543612 (+) True G10389
TU12953 lncRNA downstream 284932 2710413 ~ 2710752 (+) True G10419
TU12955 lncRNA downstream 289263 2714744 ~ 2716077 (+) True G10421
TU12957 lncRNA downstream 291405 2716886 ~ 2717183 (+) True G10423
AMCG00016021 mRNA upstream 55605 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016015 mRNA upstream 1389863 1009788 ~ 1035222 (+) True AMCG00016015
AMCG00016017 mRNA upstream 1428923 955648 ~ 996162 (+) True AMCG00016017
AMCG00016016 mRNA upstream 1625716 789186 ~ 799369 (+) True AMCG00016016
AMCG00016014 mRNA upstream 2155165 257227 ~ 269920 (+) True AMCG00016014
AMCG00016025 mRNA downstream 147088 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016030 mRNA downstream 343794 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016034 mRNA downstream 510474 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016031 mRNA downstream 572385 2997866 ~ 2998285 (+) True AMCG00016031
AMCG00016032 mRNA downstream 573202 2998683 ~ 3054898 (+) True AMCG00016032
TU12879 other upstream 111926 2312598 ~ 2313159 (+) True G10350
TU12903 other downstream 60061 2485542 ~ 2487751 (+) True G10371
TU12970 other downstream 333866 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other downstream 333866 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other downstream 333866 2759347 ~ 2761719 (+) True AMCG00016030
TU13312 other downstream 2001665 4427146 ~ 4428059 (+) True G10739

Expression Profile