RNA id: TU12889


Basic Information

Item Value
RNA id TU12889
length 460
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G10357
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2425021 ~ 2425480 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagattaacatttctaattgatttctcaaatgtcatgaatcatgAACTCCAATCAtgaacttatctgaacttcgttgCAGAGAGGCTTCTCTGGCTTTgtgctcagataacagcacacggcacaaggtccgtgtggtttggaacaaaggcagtccggttcggctttgtccaagaacttccactcagtcgatgcacctggaagttggggtttcacgaatgtagagtcttttccaaacagattttccactggtttgacggctccaaggttgtgcacaaaatcttcttggcAAGCATGGTCTCTCACTGTACttatttgaagacaaagtctttgaggaaagcagggccctgttcgttccaagggtcaagtttcttaagactcaaatagctatttaaatgacagaacactttcgtatacagtcgacttagtcaattgtccagctgtaaaactccactgatcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12875 lncRNA downstream 167306 2257416 ~ 2257715 (-) True G10346
TU12872 lncRNA downstream 174380 2250401 ~ 2250641 (-) True G10343
TU12853 lncRNA downstream 337471 2087271 ~ 2087550 (-) True G10324
TU12850 lncRNA downstream 505685 1918429 ~ 1919336 (-) True G10321
TU12848 lncRNA downstream 516727 1907925 ~ 1908294 (-) True G10319
TU12929 lncRNA upstream 107861 2533341 ~ 2534076 (-) False AMCG00016024
TU12949 lncRNA upstream 271189 2696669 ~ 2702512 (-) True G10415
TU12966 lncRNA upstream 310701 2736181 ~ 2736474 (-) True G10432
TU12969 lncRNA upstream 324178 2749658 ~ 2749864 (-) True G10435
TU12977 lncRNA upstream 340014 2765494 ~ 2767457 (-) True G10440
AMCG00016019 mRNA downstream 965189 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016020 mRNA downstream 1083810 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016018 mRNA downstream 1112936 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016010 mRNA downstream 2228123 187079 ~ 196898 (-) True AMCG00016010
AMCG00016012 mRNA downstream 2243484 159706 ~ 181537 (-) True AMCG00016012
AMCG00016023 mRNA upstream 37591 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016022 mRNA upstream 94063 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016024 mRNA upstream 107137 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016026 mRNA upstream 170534 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016027 mRNA upstream 181228 2606708 ~ 2671709 (-) True AMCG00016027
TU12954 other upstream 284919 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 608942 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 1103772 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1482279 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5766066 8191546 ~ 8194432 (-) False G11326

Expression Profile