RNA id: TU12921


Basic Information

Item Value
RNA id TU12921
length 1803
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G10389
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2541724 ~ 2543612 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CccttataaaacattatattagaCCGATAGGCAAGGCCTAGTCTTCAGTGTGCCAGTGTCACTGACAGTGAAAGGCTCACCATTATACTCTTGCTGTTGAGATAGTGTCGGGGGATCATGGGCTCCAATGTGTGTAGAAAAGCCATCCCACAGGCGATGTCCAGAGCAAACTTTACTGCCTGAGTCTGGTCAACCACGAAATCTGATGCAGAGAAGACCATGGACATTGAGATggtgaaagaaaagagaaaattataaattagttGGAGAATAGGTAATGTAATAAATGCTGCTTCTGCATCGGGATATACATGAGTACTAGAGAATTAACCTGGACATTGTCCCTTTTTTGTATATCTTCTAGACCAGACAAAGTCAAATAGATTTTTTAGCACAATCAGATAGTTAATTGGTTTTATTAACCTATAGCTTAAGGTTTTGCCCACTActcctaaaataaatgtttttacactACACCATCTAATCCCGGGTTGAGTGGACCTGAGGCAGCCCCTGGGTGACTCACCCCTGAGTTCAGCCCTGCTTGCATTCACATTTGCCTTGTGTTACAATACACAGGTTATGGTTTGCCCCAGGGCTGGACACTACATATCAACCCAGGTCAAATACAGTGACTGGGAGACAATTTACAGGTTTTTTACTCACCGCTCAGTTGAGTACAATTGTAATATTTCCATCATCTTTTTTTGCGATTTTTTTTTCTCGCAGCACTGAGATGAACTTCTGTTGTACCTGGCACTCTGCATGGCAGCCGACAATTGTACGAACacttaaattgcattttgttcCATTCATCCGTCTCTGGATATTTTCATTGGCCCATATCCTGACCAACTCAGACTTCATTTTCACACCATAGCTCTTGccatttttattaacaaatgcacacacatgcatgacCCTTGCTccttgacatttgtttttgtgtatccCTGTTGCAATAGACTAATGTTGTTCATCTCGAGGTGAGCGCTTCATCCTGGGTTGGAAATCCCAACCCTAATTTCTAGCAGGGGCAAGTTCACCCCGGATCCAGAGTTTCATCTCgggttgaaaatgtaaatgtgaaagcACTTGATTTTCATCCTGGGGTCACCTATGGTTGAACTGtctagtgtgaaagcagcttAAGTAAATTATCCCTTAAATTTTTCCAAGGAATATTCAGTGCTTCTTGAGTTTAAAGGCATTGTATAAAGCACATTAACAGATGGAAGCCGATGCTCTAGTTAAGGGAAAAGGCAGTTATatttaataactaagtgtttGAATACTTCCAATGTTTATTGTAACTGGTCTAACAATCATTAACAATGGAATAGATGGGGAGGGCCAGTATTTGAGTATACATGGCCTGGTCCATAAAGATCCTGCGTTCTGAACCTCTGAGGTTCCTTGGTGCAGGAATTATGTACAGGCTGGTATATTCACCATGCAGGTCAGCCTGTTACAATGATTTTAGAATGAAAAAAACTTTGCCgttattaattaaatcattaaaacaaatcattcaaTTAACAAAAGCAATTGAGCCATTTCACCCCAGGTCGAAAATGTGGAACACTGGGCTTCAAACCCTGCCTGGAACACCAAGCTGTGTGCTGTACTTACTTGTCCCTTCATGCAGCACATTGTAGAGTGAGCCATAGGGCATCCAGTGTGTGATGATGATGGCGTGGGGGGCAGGTGGGGACTGGCAGGCACCCAGCATGGGTAGCACATTGGGATGGGAAAATATCCTGGAAAGGAGGGAAACGGAACAGAAGGTCACAATAAAACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12904 lncRNA upstream 52040 2488761 ~ 2489684 (+) True G10372
TU12888 lncRNA upstream 116243 2425085 ~ 2425481 (+) True G10356
TU12882 lncRNA upstream 124938 2366631 ~ 2416786 (+) True G10352
TU12874 lncRNA upstream 283992 2257313 ~ 2257732 (+) True G10345
TU12871 lncRNA upstream 291097 2250426 ~ 2250627 (+) True G10342
TU12953 lncRNA downstream 166801 2710413 ~ 2710752 (+) True G10419
TU12955 lncRNA downstream 171132 2714744 ~ 2716077 (+) True G10421
TU12957 lncRNA downstream 173274 2716886 ~ 2717183 (+) True G10423
TU12965 lncRNA downstream 192560 2736172 ~ 2736476 (+) True G10431
TU13018 lncRNA downstream 492572 3036184 ~ 3036419 (+) True G10479
AMCG00016021 mRNA upstream 172244 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016015 mRNA upstream 1506502 1009788 ~ 1035222 (+) True AMCG00016015
AMCG00016017 mRNA upstream 1545562 955648 ~ 996162 (+) True AMCG00016017
AMCG00016016 mRNA upstream 1742355 789186 ~ 799369 (+) True AMCG00016016
AMCG00016014 mRNA upstream 2271804 257227 ~ 269920 (+) True AMCG00016014
AMCG00016025 mRNA downstream 28957 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016030 mRNA downstream 225663 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016034 mRNA downstream 392343 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016031 mRNA downstream 454254 2997866 ~ 2998285 (+) True AMCG00016031
AMCG00016032 mRNA downstream 455071 2998683 ~ 3054898 (+) True AMCG00016032
TU12903 other upstream 53973 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 228565 2312598 ~ 2313159 (+) True G10350
TU12970 other downstream 215735 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other downstream 215735 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other downstream 215735 2759347 ~ 2761719 (+) True AMCG00016030
TU13312 other downstream 1883534 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 4111100 6654712 ~ 6661668 (+) True AMCG00016079

Expression Profile