RNA id: TU12955


Basic Information

Item Value
RNA id TU12955
length 809
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G10421
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2714744 ~ 2716077 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgttttaaatgtcacaccGATACAATGAATAAACAACAGATCATCTTCTTCTTTAGATCTGCTACACGTGACAGCTTCTTCTTGCCATAAATCTACCGGACAGCTTTAATCAGTGCAAGTGAGTGGGTAATTTCAGAGAGGCACAGTATTGCTCTCTTTAGCTCCTATGCTGTTTTGAGCAGTCTGTCTGGGAGTTCAGCTCGCAGCAGGTGCCACGTCTCACTCAGTGAGGAGTGTCAGGGGCCTGTGTGGTGCTGTTGCTGGGTATTGTCTGACTGCTATGTTCTGGAAGGGCACTGCCTTCAACAGGCAGAGGGATGCTCTGGTCAGGAGAAGTGCCTGCCCTGGATGCCTGTGCCATCTGCTCCGCCTTGCTCTCGTACTCCGCCAGTCTCCGCTGCACAATGCCAGGCATGAGCTGGACATAGGTGGCCATGAGCCGGTGATTGGAGCGAATCAGCTTACCAGCACAGCTGTCCAGACAATGCTCTCCATTGTCATTGTCCTGTAGTTCAGGTTATTTGTGCAGCGCTGGAAACAGATTTCTGTCATCTTATTGTAAACCAGGAGAAAATCCCTTAGCTGAAACAAaagataattttaataattttgcgaacaattcattatttttgctcACTGTGAGCCAATATCAAGTCTAAATTATCATATCTTCGACGTATATTATGATCATATGCCCGGTCCTTCCGCAATAGAAAAATAACGATTaacttaaatatatgtatgaagTACCACTGCAGCGATGAACTACATGGATTATTTAGCTATTAATAACATGTAATAACTCCG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0005739 mitochondrion cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12953 lncRNA upstream 3992 2710413 ~ 2710752 (+) True G10419
TU12921 lncRNA upstream 171132 2541724 ~ 2543612 (+) True G10389
TU12904 lncRNA upstream 225060 2488761 ~ 2489684 (+) True G10372
TU12888 lncRNA upstream 289263 2425085 ~ 2425481 (+) True G10356
TU12882 lncRNA upstream 297958 2366631 ~ 2416786 (+) True G10352
TU12957 lncRNA downstream 809 2716886 ~ 2717183 (+) True G10423
TU12965 lncRNA downstream 20095 2736172 ~ 2736476 (+) True G10431
TU13018 lncRNA downstream 320107 3036184 ~ 3036419 (+) True G10479
TU13027 lncRNA downstream 379899 3095976 ~ 3096205 (+) True G10487
TU13073 lncRNA downstream 564334 3280411 ~ 3281165 (+) True G10528
AMCG00016025 mRNA upstream 117897 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016021 mRNA upstream 345264 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016015 mRNA upstream 1679522 1009788 ~ 1035222 (+) True AMCG00016015
AMCG00016017 mRNA upstream 1718582 955648 ~ 996162 (+) True AMCG00016017
AMCG00016016 mRNA upstream 1915375 789186 ~ 799369 (+) True AMCG00016016
AMCG00016030 mRNA downstream 53198 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016034 mRNA downstream 219878 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016031 mRNA downstream 281789 2997866 ~ 2998285 (+) True AMCG00016031
AMCG00016032 mRNA downstream 282606 2998683 ~ 3054898 (+) True AMCG00016032
AMCG00016033 mRNA downstream 338931 3055008 ~ 3060444 (+) True AMCG00016033
TU12903 other upstream 226993 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 401585 2312598 ~ 2313159 (+) True G10350
TU12970 other downstream 43270 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other downstream 43270 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other downstream 43270 2759347 ~ 2761719 (+) True AMCG00016030
TU13312 other downstream 1711069 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 3938635 6654712 ~ 6661668 (+) True AMCG00016079

Expression Profile