RNA id: TU12957


Basic Information

Item Value
RNA id TU12957
length 298
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G10423
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2716886 ~ 2717183 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTCCTATTTACAGAAGTTCATGCAATCAAAGTTCCCTTCGTGCTGCACCAGCTTCATACTTTACAGCGTAATCAGAAAATGGGCaatttaatcagttcatatcagattaagtagctttacgatccgttaataatctttaattagtAGAAATCTGTATTCCTACTCATTGTTGGGacacttaagggttaaatactCACATACTGATCAACATAATtacaacagattttgtttgtgtgtgtacaatattatatatacactggttTCGAATCTACTTTAAACCTGTGCattcagagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12955 lncRNA upstream 809 2714744 ~ 2716077 (+) True G10421
TU12953 lncRNA upstream 6134 2710413 ~ 2710752 (+) True G10419
TU12921 lncRNA upstream 173274 2541724 ~ 2543612 (+) True G10389
TU12904 lncRNA upstream 227202 2488761 ~ 2489684 (+) True G10372
TU12888 lncRNA upstream 291405 2425085 ~ 2425481 (+) True G10356
TU12965 lncRNA downstream 18989 2736172 ~ 2736476 (+) True G10431
TU13018 lncRNA downstream 319001 3036184 ~ 3036419 (+) True G10479
TU13027 lncRNA downstream 378793 3095976 ~ 3096205 (+) True G10487
TU13073 lncRNA downstream 563228 3280411 ~ 3281165 (+) True G10528
TU13092 lncRNA downstream 654368 3371551 ~ 3371894 (+) True G10547
AMCG00016025 mRNA upstream 120039 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016021 mRNA upstream 347406 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016015 mRNA upstream 1681664 1009788 ~ 1035222 (+) True AMCG00016015
AMCG00016017 mRNA upstream 1720724 955648 ~ 996162 (+) True AMCG00016017
AMCG00016016 mRNA upstream 1917517 789186 ~ 799369 (+) True AMCG00016016
AMCG00016030 mRNA downstream 52092 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016034 mRNA downstream 218772 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016031 mRNA downstream 280683 2997866 ~ 2998285 (+) True AMCG00016031
AMCG00016032 mRNA downstream 281500 2998683 ~ 3054898 (+) True AMCG00016032
AMCG00016033 mRNA downstream 337825 3055008 ~ 3060444 (+) True AMCG00016033
TU12903 other upstream 229135 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 403727 2312598 ~ 2313159 (+) True G10350
TU12970 other downstream 42164 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other downstream 42164 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other downstream 42164 2759347 ~ 2761719 (+) True AMCG00016030
TU13312 other downstream 1709963 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 3937529 6654712 ~ 6661668 (+) True AMCG00016079

Expression Profile