RNA id: TU12977


Basic Information

Item Value
RNA id TU12977
length 640
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G10440
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2765494 ~ 2767457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGATGGATCCAGATTCTCCCTTTTTCATCGTTGACCTAGTGTCATTTGTCTCTTCAGGCAGTGCACACGCTGATTGCCCTGCAGAAGCGATACAACAGTGCTATCGGCAAGCTCACCCCTGCAGAGGAGGATGCCATTTGGCAAGTTATTATTGGTGCTCGTGTGGAGATTTTagcagttctgcgcggatctgcggagctccaccaatgggagagAAGAATTCTGCAGTTCTACGCTTAACTACGATAATCTGCACACAAAGAACCCgacctaaaacatgaatattcggAAAATAACGTGAGCGCTGCTCAATTACTTGGGGGCTGTGCTGTCAttgccaaatatactgactggtgccaatcagtttagacaattgaggggCGGGCTggcaataaactaaaataataataataatacagacagtCGCTCACTTGCGTGACAAGTCGCGTGACAAGCTGTACGGCTCTGCGTGCTACAGGTTTGCCATCTCTGGTCTAGAGTGTGTTAGACCCTTTAAGAGATCGTCTTGTATGAGgataaattgttattttatgttcttaatttctCAGTTTCTTTATGCCGCTGCTTGTTCAGTTCTTGGCCACAGATCAGTTCTAGAACCTagatccatttttttt

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12969 lncRNA downstream 15630 2749658 ~ 2749864 (-) True G10435
TU12966 lncRNA downstream 29020 2736181 ~ 2736474 (-) True G10432
TU12949 lncRNA downstream 62982 2696669 ~ 2702512 (-) True G10415
TU12929 lncRNA downstream 231418 2533341 ~ 2534076 (-) False AMCG00016024
TU12889 lncRNA downstream 340014 2425021 ~ 2425480 (-) True G10357
TU12994 lncRNA upstream 16668 2784125 ~ 2846357 (-) True AMCG00016029
TU13003 lncRNA upstream 105767 2873224 ~ 2963628 (-) True G10464
TU13002 lncRNA upstream 151454 2918911 ~ 2963628 (-) False G10464
TU13013 lncRNA upstream 210540 2977997 ~ 2978208 (-) True G10474
TU13023 lncRNA upstream 272914 3040371 ~ 3047869 (-) True G10483
AMCG00016028 mRNA downstream 49642 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 93785 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 165017 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016024 mRNA downstream 210548 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016022 mRNA downstream 238217 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016029 mRNA upstream 17695 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016041 mRNA upstream 696209 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 730245 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016046 mRNA upstream 761385 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 855461 3622918 ~ 3668558 (-) True AMCG00016047
TU12954 other downstream 54809 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 266965 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 761795 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1140302 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5424089 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 8079377 10846834 ~ 10847811 (-) True AMCG00016176

Expression Profile