RNA id: TU13003


Basic Information

Item Value
RNA id TU13003
length 901
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G10464
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2873224 ~ 2963628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtatgtatatatatatatatcaaatttTAAATCATCACCACAAAAAACCCTTTGTCatcttatatacatatacacagacatatTTACTTAAGCTTTTGTGATCATTTACTcaattttcaaatgtaacatCACATGTTCAGGCTGTTTTGTAACTTTCACGTtacaaatgtcattttcaacAAAATAGTACCTAAATAGAAGTTTACAAAGGAAAAAGCAAGCTAAAAAGCAAAGCCCTTAATCATACCATTTAAACGCCCCTACTACTTTCtaaaaaaatgattgcattttaaacaaattatgtcAAACATCTCATTTATCAAAGTTGCTCTAAATTTGGAGGTTAAATTAGGCAAGGAAAAAAAGTCTGAATATTCCAAATTAAAGCATCTACCCGAGATTATcttatctatataaaaaaacaacatatgacaGGATTTTCAGATACGCTTCTGGGAATTGAATAGTAGTCTTTAACAGTGCCAAAAAAGCAGCAATTGAACACAAGTCTGGTAATCAACTGATTGAGGTATATTACTTCAGTAAAGGCCCAGTACTGTCCTTGTCAATGTTAGTTTCAAACTTCTGGAGCATTATGAAGACAAATAATAGACAATAGGCCATGGgagtaaatatttcaaatgaggAGACAGACCTGGTTTTGGGTGAAATGGAAATCAAAGACCAAAATCTTAACAATGCCCTGAATTAACCGATACCTTTATCTCACAAAGAGGGTGCCATTTTGGCTTCCAATGTATAActaatattatacatacatacacactcatacatatacatatacatatNNNNatatatacatatacacagtatgatttactgtcacataacaacaataacacaagtaatagtaatcacgcaacacatgcgctgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12994 lncRNA downstream 26867 2784125 ~ 2846357 (-) True AMCG00016029
TU12977 lncRNA downstream 105767 2765494 ~ 2767457 (-) True G10440
TU12969 lncRNA downstream 123360 2749658 ~ 2749864 (-) True G10435
TU12966 lncRNA downstream 136750 2736181 ~ 2736474 (-) True G10432
TU12949 lncRNA downstream 170712 2696669 ~ 2702512 (-) True G10415
TU13013 lncRNA upstream 14369 2977997 ~ 2978208 (-) True G10474
TU13023 lncRNA upstream 76743 3040371 ~ 3047869 (-) True G10483
TU13026 lncRNA upstream 121675 3085303 ~ 3085537 (-) True G10486
TU13074 lncRNA upstream 316862 3280490 ~ 3281193 (-) True G10529
TU13093 lncRNA upstream 407913 3371541 ~ 3371898 (-) True G10548
AMCG00016029 mRNA downstream 79778 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016028 mRNA downstream 157372 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 201515 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 272747 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016024 mRNA downstream 318278 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016041 mRNA upstream 500038 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 534074 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016046 mRNA upstream 565214 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 659290 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016045 mRNA upstream 819906 3783534 ~ 3784496 (-) True AMCG00016045
TU12954 other downstream 162539 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 70794 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 565624 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 944131 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5227918 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7883206 10846834 ~ 10847811 (-) True AMCG00016176

Expression Profile