RNA id: TU13018


Basic Information

Item Value
RNA id TU13018
length 236
lncRNA type intronic
GC content 0.47
exon number 1
gene id G10479
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3036184 ~ 3036419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacacagtattagtatggtgttcctaataatcctttaggtgagtgtatgtggtAGGTTTATATGGGTATCGGGTAAAAATCCCATAACCAAAGCAACAGTTTAAgcatataaaaacaaaggtaTTATAAGAATAAACTTTGCTGAATCTTTTGAAGCATAATATAGGGTTAAGGGTAgttctttgtgtttgttgttttgattaacATATCAGATTGCTGCAAATACGATACAAAAT

Function

GO: NA

KEGG:

id description
ko04725 Cholinergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12965 lncRNA upstream 299708 2736172 ~ 2736476 (+) True G10431
TU12957 lncRNA upstream 319001 2716886 ~ 2717183 (+) True G10423
TU12955 lncRNA upstream 320107 2714744 ~ 2716077 (+) True G10421
TU12953 lncRNA upstream 325432 2710413 ~ 2710752 (+) True G10419
TU12921 lncRNA upstream 492572 2541724 ~ 2543612 (+) True G10389
TU13027 lncRNA downstream 59557 3095976 ~ 3096205 (+) True G10487
TU13073 lncRNA downstream 243992 3280411 ~ 3281165 (+) True G10528
TU13092 lncRNA downstream 335132 3371551 ~ 3371894 (+) True G10547
TU13106 lncRNA downstream 401655 3438074 ~ 3443096 (+) True G10560
TU13131 lncRNA downstream 482469 3518888 ~ 3519591 (+) True G10584
AMCG00016031 mRNA upstream 37899 2997866 ~ 2998285 (+) True AMCG00016031
AMCG00016034 mRNA upstream 89820 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016030 mRNA upstream 223953 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016025 mRNA upstream 439337 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016021 mRNA upstream 666704 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016033 mRNA downstream 18589 3055008 ~ 3060444 (+) True AMCG00016033
AMCG00016036 mRNA downstream 111369 3147788 ~ 3164940 (+) True AMCG00016036
AMCG00016037 mRNA downstream 152280 3188699 ~ 3189951 (+) True AMCG00016037
AMCG00016035 mRNA downstream 214268 3250687 ~ 3259152 (+) True AMCG00016035
AMCG00016038 mRNA downstream 304246 3340665 ~ 3364028 (+) True AMCG00016038
TU12970 other upstream 265514 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 274465 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 274465 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 548433 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 723025 2312598 ~ 2313159 (+) True G10350
TU13312 other downstream 1390727 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 3618293 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 3627667 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 6031862 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 6063001 9099420 ~ 9100036 (+) True G11509

Expression Profile