RNA id: TU13027


Basic Information

Item Value
RNA id TU13027
length 230
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G10487
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3095976 ~ 3096205 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgaatAATGTTCAACCAGGCTTAATAGCCCTGCCCGTTCATTAAATGTGTTGCCCTGAATTCAAGGTAACCATTAAGATGCTACTTATTCTTACAATTACTAATCTGTTAAATCtcaatcatttaattttaaacccctCTTAGATGCAATCTTTACACTTTCAAgttagtgtatttttaatgtcactatttggaaagtttaatttgtctttagtgCGCTCACAGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13018 lncRNA upstream 59557 3036184 ~ 3036419 (+) True G10479
TU12965 lncRNA upstream 359500 2736172 ~ 2736476 (+) True G10431
TU12957 lncRNA upstream 378793 2716886 ~ 2717183 (+) True G10423
TU12955 lncRNA upstream 379899 2714744 ~ 2716077 (+) True G10421
TU12953 lncRNA upstream 385224 2710413 ~ 2710752 (+) True G10419
TU13073 lncRNA downstream 184206 3280411 ~ 3281165 (+) True G10528
TU13092 lncRNA downstream 275346 3371551 ~ 3371894 (+) True G10547
TU13106 lncRNA downstream 341869 3438074 ~ 3443096 (+) True G10560
TU13131 lncRNA downstream 422683 3518888 ~ 3519591 (+) True G10584
TU13183 lncRNA downstream 680871 3777076 ~ 3821028 (+) True G10627
AMCG00016033 mRNA upstream 35532 3055008 ~ 3060444 (+) True AMCG00016033
AMCG00016032 mRNA upstream 41078 2998683 ~ 3054898 (+) True AMCG00016032
AMCG00016031 mRNA upstream 97691 2997866 ~ 2998285 (+) True AMCG00016031
AMCG00016034 mRNA upstream 149612 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016030 mRNA upstream 283745 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016036 mRNA downstream 51583 3147788 ~ 3164940 (+) True AMCG00016036
AMCG00016037 mRNA downstream 92494 3188699 ~ 3189951 (+) True AMCG00016037
AMCG00016035 mRNA downstream 154482 3250687 ~ 3259152 (+) True AMCG00016035
AMCG00016038 mRNA downstream 244460 3340665 ~ 3364028 (+) True AMCG00016038
AMCG00016039 mRNA downstream 355210 3451415 ~ 3485934 (+) True AMCG00016039
TU12970 other upstream 325306 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 334257 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 334257 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 608225 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 782817 2312598 ~ 2313159 (+) True G10350
TU13312 other downstream 1330941 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 3558507 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 3567881 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 5972076 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 6003215 9099420 ~ 9100036 (+) True G11509

Expression Profile