RNA id: TU13093


Basic Information

Item Value
RNA id TU13093
length 358
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G10548
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3371541 ~ 3371898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggagttgcttctaactggagtgaggttgttagtggagttcaacagggatcagtattagggcctgtgctttttctaatctatattaatgatctggactctgggatagttcgcaaacttgtcaaatttacagataataccaaaataggtggctcagcagatacaatctgtgtagatgtgtagaatttagaacaagggatgttaatgttaagactgtacaatgcactagttagactaGTTagatctggaatactgtgtacagttctggggtccacacttcaagaaagatatcactgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13074 lncRNA downstream 90348 3280490 ~ 3281193 (-) True G10529
TU13026 lncRNA downstream 286004 3085303 ~ 3085537 (-) True G10486
TU13023 lncRNA downstream 323672 3040371 ~ 3047869 (-) True G10483
TU13013 lncRNA downstream 393333 2977997 ~ 2978208 (-) True G10474
TU13003 lncRNA downstream 407913 2873224 ~ 2963628 (-) True G10464
TU13101 lncRNA upstream 6480 3378378 ~ 3378585 (-) True G10556
TU13140 lncRNA upstream 118860 3490758 ~ 3547091 (-) True G10592
TU13146 lncRNA upstream 142541 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA upstream 144115 3516013 ~ 3522035 (-) False G10596
TU13179 lncRNA upstream 369695 3741593 ~ 3742262 (-) True G10624
AMCG00016029 mRNA downstream 578095 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016028 mRNA downstream 655689 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 699832 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 771064 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016024 mRNA downstream 816595 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016041 mRNA upstream 91768 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 125804 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016046 mRNA upstream 156944 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 251020 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016045 mRNA upstream 411636 3783534 ~ 3784496 (-) True AMCG00016045
TU13017 other downstream 336358 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 660856 2710399 ~ 2710685 (-) True G10420
TU13149 other upstream 157354 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 535861 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 4819648 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7474936 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 7475033 10846931 ~ 10847811 (-) False AMCG00016176

Expression Profile