RNA id: TU13106


Basic Information

Item Value
RNA id TU13106
length 250
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G10560
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3438074 ~ 3443096 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAAAATAGACCATACTGAAGTCAAGGTAGTAAGAAGGTGtaggataagggcatctgctaagaaataaataataatgtaacatcCCTGATCAGAATCACTGACATTACATTGATTACAGCCTCTCCTGGGAATCCTCTTGTGAAGCTGCAATGGGAGAATGTACTTCTCTCTGGGTCGGTCTGGCAATAACAGCAATAGCACTGCTCAtatctgtttgtttaaatgtcatcTTCTACAGACAAAGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13092 lncRNA upstream 66180 3371551 ~ 3371894 (+) True G10547
TU13073 lncRNA upstream 156909 3280411 ~ 3281165 (+) True G10528
TU13027 lncRNA upstream 341869 3095976 ~ 3096205 (+) True G10487
TU13018 lncRNA upstream 401655 3036184 ~ 3036419 (+) True G10479
TU12965 lncRNA upstream 701598 2736172 ~ 2736476 (+) True G10431
TU13131 lncRNA downstream 75792 3518888 ~ 3519591 (+) True G10584
TU13183 lncRNA downstream 333980 3777076 ~ 3821028 (+) True G10627
TU13214 lncRNA downstream 457480 3900576 ~ 3901422 (+) True G10654
TU13265 lncRNA downstream 534463 3977559 ~ 3979097 (+) True G10695
TU13277 lncRNA downstream 766285 4209381 ~ 4209645 (+) True G10707
AMCG00016038 mRNA upstream 74046 3340665 ~ 3364028 (+) True AMCG00016038
AMCG00016035 mRNA upstream 178922 3250687 ~ 3259152 (+) True AMCG00016035
AMCG00016037 mRNA upstream 248123 3188699 ~ 3189951 (+) True AMCG00016037
AMCG00016036 mRNA upstream 273134 3147788 ~ 3164940 (+) True AMCG00016036
AMCG00016033 mRNA upstream 377630 3055008 ~ 3060444 (+) True AMCG00016033
AMCG00016039 mRNA downstream 8319 3451415 ~ 3485934 (+) True AMCG00016039
AMCG00016040 mRNA downstream 138584 3581680 ~ 3586657 (+) True AMCG00016040
AMCG00016043 mRNA downstream 163362 3606458 ~ 3615523 (+) True AMCG00016043
AMCG00016044 mRNA downstream 356493 3799589 ~ 3817285 (+) True AMCG00016044
AMCG00016052 mRNA downstream 399531 3842627 ~ 3854910 (+) True AMCG00016052
TU12970 other upstream 667404 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 676355 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 676355 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 950323 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 1124915 2312598 ~ 2313159 (+) True G10350
TU13312 other downstream 984050 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 3211616 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 3220990 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 5625185 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 5656324 9099420 ~ 9100036 (+) True G11509

Expression Profile