RNA id: TU13146


Basic Information

Item Value
RNA id TU13146
length 656
lncRNA type inter_gene
GC content 0.59
exon number 3
gene id G10596
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3514439 ~ 3522035 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACACGTCCCACGCCGCAGCACCTGGACTCCAGTCACTCGGTCAGTGTTAGTGGAGACTGTGCGTGAAGAGGACCGGACAGGCCATTGCGGACAGCAGGGCAGTGAGCTCTCGGGCTGTCCAAACAGAGCCTGAACATCCACCGCAAACTTTCCCTTTCGAAGACGCTGGGTGTTGCTGAGACGGACACTGCTTTTCCTTATTGCTCTCTTCCGGGTGTCGGTGGCATTCCCTGCAGTCCCGGGACACTTTCACAGGCAGACATGAGCGCCGAGGGCATCGAGCTGCAGCCCCTGGCACAGGCCACTCCGCTGCAGGTCAACGTGCGCATCGCCAGCGAGGAGGGCAGCAGGAGAAATGTGTCCCAGACAGTGAATGAATTGGAGGAAGTCACAGAAGGTAGTCTGTTAGTCTCTAATGGGGAGAATCTGAATGAACAGgttgttccaccatttaggggccagggatgagaagaagCGGGCTCttgaggaaggagagtggagaggaggcagagttagtcttctggcaccggaagagcacatgaggactgaggagagggaggctgcccgagcacagctgagggagtcagtgactgccaggagagccgtctcagtggagtgagctgtgtggaagccggattgcagaggatcaaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13101 lncRNA downstream 135854 3378378 ~ 3378585 (-) True G10556
TU13093 lncRNA downstream 142541 3371541 ~ 3371898 (-) True G10548
TU13074 lncRNA downstream 233246 3280490 ~ 3281193 (-) True G10529
TU13026 lncRNA downstream 428902 3085303 ~ 3085537 (-) True G10486
TU13023 lncRNA downstream 466570 3040371 ~ 3047869 (-) True G10483
TU13179 lncRNA upstream 219558 3741593 ~ 3742262 (-) True G10624
TU13241 lncRNA upstream 347689 3869724 ~ 3912272 (-) True G10673
TU13262 lncRNA upstream 449851 3971886 ~ 3973511 (-) True G10692
TU13266 lncRNA upstream 455524 3977559 ~ 3979117 (-) True G10696
TU13268 lncRNA upstream 465618 3987653 ~ 3987955 (-) True G10698
AMCG00016042 mRNA downstream 11588 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016041 mRNA downstream 38446 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016029 mRNA downstream 720993 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016028 mRNA downstream 798587 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 842730 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016046 mRNA upstream 6807 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 100883 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016045 mRNA upstream 261499 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016050 mRNA upstream 301216 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016049 mRNA upstream 364263 3886298 ~ 3920503 (-) True AMCG00016049
TU13017 other downstream 479256 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 803754 2710399 ~ 2710685 (-) True G10420
TU13149 other upstream 7217 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 385724 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 4669511 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7324799 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 7324896 10846931 ~ 10847811 (-) False AMCG00016176

Expression Profile