RNA id: TU13183


Basic Information

Item Value
RNA id TU13183
length 2740
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G10627
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3777076 ~ 3821028 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatacactcaccatttaacaaatacataaatataaatatacactcatcatttaatatatattcaatattatacacacccacacttTGTTCCACTTTGGATTAGGCCATATTTGAGGAACTCTGTTCAACTCTCTAGCTTATACAGTGGAGGGAAGTAACACTAGTCCTCTAACACAGGCTGCTGGAGTATGTTTTCAGAGCCAGGGGACGTCTGTGACTATAGTCTGAGAAATCTGGAGCACAAAATTGTCAATTGTTGAATTATATTCAAAACATGAGAGAAACACCGAAAACACACTTGTAAGAAAACAGTCCTacaattgtttttctgttgcatCTCCAAAATGACATTTCACCCAGAAGGCTAGTTTTGTGCTTCATGTAGTTCAGAATAAGAATTGTTCACAAGACAATGGCCTTTGTATTCTGTGGGGTTTTATTCATGCTTTTTTTGCATAACTGTGCAGTGTAGagctttttttacatttactgtattctGATAACCTGCTTTCTCCTTTGGGAGGGTTCCCTGCATCCCACATATTTATTGCAGCTGTTGTCTGCTGTGCGTGAAGTGACATGTGCTGAACAGCCACtggccccccgccccccctttAAAGAGGGATACAAAACTATATTCAGTGTTATTCATCCAAACTAATCAAAATACTACTGAATGgacacattttattgatttactgaTGGCTTTGCAGTGGTCTGGCGTGTTCCTTCTCAATCAGCATCacaatgcatgtatgtattaagCAGCTGTGTGCAGATTAAACTGGTCCCATGTTAGTGTTTGGAGTACAATATGTGGTGAGATGTGACTCAATCATATGTAATGGCAACCCAGACAAACTGGTGGCTGTAATTGTCATGCTGAGGACGAGTCTGGTCCAGGAAGGGGCTCCAAATGCAGTTCCTCAGTGAAAAGGGCTGGATTAAAACAATTTGAGGAGGAATAGGAGACACATGACACAAggtaataaatgcatataaatacagATCTCTTCAATAAGGGGGCAGACTTAAACACTGACAACTAaatgtgtgtgcacgtgtgagtgtgtatacacacacacgtaactATTAATGAACAGGTCTAATGTGTTTCATGTAGGGTTTCTGATTGTAGGACTTGAATCCCTTCAATTTTTGGTGTGCTCTTTATTCAGAGTCAGGGTTAAACCTGCAAAATCCCTGTACAGACTGAGGagtgtatatgaatatgaatataaacatGAACAGAGGTCTGTGAGTCAAACATGAATGCAAAGAGGGGAACTGCTATAGGTAAACCCACATCAACTTTAAACAGCTGGACTCTTAGCCATGTGGCCTTAGGGTTTCTGTTTCTCTTACGCGCTGGTTTTCAACCCAGTcttggaggaccccctgccctgctggtttttgttccaaccgagctctcaattaccgaattgaacccttaattgaagtaataatttcctaaatcagagccttttcattactttaaacagtaggggtaaAATTAAGTATGAAATTATCTAATTCAGGAACCAACGTTTTATCATTTACAggatttaaagagtcaaatgtaatcaaatcattccaattaagggttcaattcaGTAAccgagctcggttggaacaaaatccagcagggcAGCTCCTCCAGGACAGGGTTGAAATCCACTGCTCTAACGTATTATGAAACGgagtgaagtttttttttttttttctgtatgtagtTAACATGAGGAACTAGCCATCTGAGAGACTCAGCTGGTATTTAAGgatgtgtttaatttgcaataaaACTGCTGACAAAATCAGACCAGTAGACTTTTATACACTAAGTGTTTTGTTCATACAGAAAGAATAGTTAGCTACTTTAAGCATTTTTTGAAATGTAGAACCTGGTATCCTTTCTTGATCATATATAGAGAAATCACCCAATTTCACTGGATTtgttacaaagaaaaatatccgacctgatttttaaaaactattgaccttaatttgagaaaaaaaaataaaaaaaaactataattccCCCCAAAATCAGAACCCTTCATTACAAGTGATTTTGTGTACAGGAagtgttcaaatgtttttgaagTGTGCAATGGTCTAATTCGATGTGAAAAGGTGTTACATTGAGTTTAACTTTAATATGTTCAGTATAAGTTATTCAGAACAGTCAAAGGGATTTACAGTCTGTAACTTGTGTGGTGTACTTTTGTTATtgaaactaaaaaagaaaaaatgtaaacagtgatTCTGTCTATTAGACAGCCATCATATTAGTTAAGGGTGAGAAGTATCTTCTGTTAAATGAGAACTTGCTAATTGACCTTCCTTGAGCTACTGTCAGCACAACCCGCACATCGGCCTCATtctcacagcacacacacaggaaatacTGCTCCGTCCAAGAAGCGGATGGCCTGCACTGAGGGTGTTGAGAACAGAGTTTAAGCAGATGCAGTGTTTAATTACTGCTGCTAATGGGAGGTTAAAATCAACTACGTTTTTGATATTCCTCAGTTAGTTCTCCTTTCCTTGGGTGATGCAGCTCCTGCTTTACTACAGCCGAGGCGACTGCGCAGCCTGTGTTCTTTGGGTTTAAGTGTGATAATGGTGCTTAATACCACCTGGAAGACATTTGGTACCAAGTCAACATCTTGTAAGCAGTTAAAACTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13131 lncRNA upstream 257485 3518888 ~ 3519591 (+) True G10584
TU13106 lncRNA upstream 333980 3438074 ~ 3443096 (+) True G10560
TU13092 lncRNA upstream 405182 3371551 ~ 3371894 (+) True G10547
TU13073 lncRNA upstream 495911 3280411 ~ 3281165 (+) True G10528
TU13027 lncRNA upstream 680871 3095976 ~ 3096205 (+) True G10487
TU13214 lncRNA downstream 79548 3900576 ~ 3901422 (+) True G10654
TU13265 lncRNA downstream 156531 3977559 ~ 3979097 (+) True G10695
TU13277 lncRNA downstream 388353 4209381 ~ 4209645 (+) True G10707
TU13305 lncRNA downstream 515013 4336041 ~ 4336304 (+) True G10732
TU13309 lncRNA downstream 550459 4371487 ~ 4373721 (+) True G10736
AMCG00016043 mRNA upstream 161553 3606458 ~ 3615523 (+) True AMCG00016043
AMCG00016040 mRNA upstream 190419 3581680 ~ 3586657 (+) True AMCG00016040
AMCG00016039 mRNA upstream 291142 3451415 ~ 3485934 (+) True AMCG00016039
AMCG00016038 mRNA upstream 413048 3340665 ~ 3364028 (+) True AMCG00016038
AMCG00016035 mRNA upstream 517924 3250687 ~ 3259152 (+) True AMCG00016035
AMCG00016052 mRNA downstream 21599 3842627 ~ 3854910 (+) True AMCG00016052
AMCG00016054 mRNA downstream 62332 3883360 ~ 3884302 (+) True AMCG00016054
AMCG00016051 mRNA downstream 128153 3949181 ~ 3966186 (+) True AMCG00016051
AMCG00016057 mRNA downstream 305462 4126490 ~ 4128878 (+) True AMCG00016057
AMCG00016056 mRNA downstream 339327 4160355 ~ 4188956 (+) True AMCG00016056
TU12970 other upstream 1006406 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 1015357 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 1015357 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 1289325 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 1463917 2312598 ~ 2313159 (+) True G10350
TU13312 other downstream 606118 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 2833684 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 2843058 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 5247253 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 5278392 9099420 ~ 9100036 (+) True G11509

Expression Profile