RNA id: TU13265


Basic Information

Item Value
RNA id TU13265
length 1539
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G10695
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3977559 ~ 3979097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caccgatcctccaccaaatttcacagtgggtgcgagacactgtggcttgtaggcatCTCCAGGtttccgtctaaccattagacgaccaggtgttgggaAAAGCTGataattggactcatcagagaagatgaccttactccagtcatctacggtccaatccttatggtcttttgtaaacctcagcctggctcttctttgcttctcatttgcttttttctagctttgcacgacttcagccctgcccctaggagcctgtttcgaaccgCCCTCGCCATGcccttcaccccagctgccgcttgccattctttttgtaggtcacctgatgtcatcctacagttgttgagtgacattcaaatgagTTGGCATTCATCccagtcagtggagagtcgttttcgccctctgccggtctgtagctttgttgtccccaatgtctgctgcttgaccttgttcttatgaaccgccgtctttgacattttaaggatggaagcaacacgacgctcactgtatccctctcccagtaaagccagaactgaacacttcttttcctcactcaaaactttccttttcaactcttttggtgTGGTCAATAgtaattttttgattccaattactttttagGTACtgctagcactgtttttgccatccggCTGGTCGTATttcaagaggatagtgatgaccacagcagtggtttttatacttttcctcgttaaattttggttcaggtgatcacctaatcactgcctcattcagtagaatgaggtgtgcctgtttTGGAATTcagcagacactggaatggaatggctgccagtcatgtagagatgctgatttaagataaatttgcagtggtctcttaattttttccagagctgtatatgtgtgtgtgtgtgtgtatatgtgtgtgtatatacacagatGATCAATACATCTGCTACAGCTGTGTGCCAATTACCATTTGATGGTCAAACATGGAATTTATtcattcctttttattattctaaTCTCTTGTGGAACTGTACATAACAGGaagcaaacaaaaggaaagTAGTATTCTGAAATGTACCAACATTTGAAGTCATTTGTAATTACTGAATAAATCCAGTAATTAGATTTACtcaataaagtacattttagtaatgtaaaactaatttaaCTGGATTTACCTGTAATTACTCTGTAATGTTAGACCATGTATTTGAAAGATGAAAGCTAGTTCAGCAGAAATGCATAATACACTTTTTACCTGGTTCCACCCTGacagttaaaatgtatgtatgttaacATGTAttcttttgtatatatgtaatgttttgtaataaaaaggtaaatacatatttacatatgtcTGTATATTTGGTAACCTTGCTCTGAATTTTAAGGATTTCCACtctattttttgtaatgtaatgtgtttattctttaaaatatgtgtaatttGTGGAGTGCAATGTAGAGTGGTCAGGCTTTTTTTGAATATGAAGGTCTGGGTTAATATTctcataaacattttaaaagtctaaCACTGTACTGTTTTTCTTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13214 lncRNA upstream 76137 3900576 ~ 3901422 (+) True G10654
TU13183 lncRNA upstream 156531 3777076 ~ 3821028 (+) True G10627
TU13131 lncRNA upstream 457968 3518888 ~ 3519591 (+) True G10584
TU13106 lncRNA upstream 534463 3438074 ~ 3443096 (+) True G10560
TU13092 lncRNA upstream 605665 3371551 ~ 3371894 (+) True G10547
TU13277 lncRNA downstream 230284 4209381 ~ 4209645 (+) True G10707
TU13305 lncRNA downstream 356944 4336041 ~ 4336304 (+) True G10732
TU13309 lncRNA downstream 392390 4371487 ~ 4373721 (+) True G10736
TU13310 lncRNA downstream 397210 4376307 ~ 4377663 (+) True G10737
TU13384 lncRNA downstream 606137 4585234 ~ 4585486 (+) True G10798
AMCG00016051 mRNA upstream 11373 3949181 ~ 3966186 (+) True AMCG00016051
AMCG00016054 mRNA upstream 93257 3883360 ~ 3884302 (+) True AMCG00016054
AMCG00016052 mRNA upstream 122649 3842627 ~ 3854910 (+) True AMCG00016052
AMCG00016044 mRNA upstream 160274 3799589 ~ 3817285 (+) True AMCG00016044
AMCG00016043 mRNA upstream 362036 3606458 ~ 3615523 (+) True AMCG00016043
AMCG00016057 mRNA downstream 147393 4126490 ~ 4128878 (+) True AMCG00016057
AMCG00016056 mRNA downstream 181258 4160355 ~ 4188956 (+) True AMCG00016056
AMCG00016055 mRNA downstream 222666 4201763 ~ 4205314 (+) True AMCG00016055
AMCG00016060 mRNA downstream 490965 4470062 ~ 4477338 (+) True AMCG00016060
AMCG00016061 mRNA downstream 516721 4495818 ~ 4499954 (+) True AMCG00016061
TU12970 other upstream 1206889 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 1215840 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 1215840 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 1489808 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 1664400 2312598 ~ 2313159 (+) True G10350
TU13312 other downstream 448049 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 2675615 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 2684989 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 5089184 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 5120323 9099420 ~ 9100036 (+) True G11509

Expression Profile