RNA id: TU13312



Basic Information


Item Value
RNA id TU13312
length 914
RNA type TUCP
GC content 0.37
exon number 1
gene id G10739
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4427146 ~ 4428059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCCGCTCTCCTGGGCCGGCTCCGAACTCACCTTCCAGCCGGCGGAGCTGTTGCTGTCGCCCTTGTCCTTGAAGTAGGGGACGCTCTTGACCATCCAGTCGTAGATCTGCGACAAGGTGAGGCGCTTCTCGGGAGAGCTCTCGATGGCTTTGGTGATCAGGTCGGCGTAAGACATATTTCCCCAGGCATTGCGTCGAGAGGAGCTGCTCTTCCGCTGGGCAGCAGCAGCCACCGAGGCGGCCGAGCCGGCCGGGGAGGACAGGGGCGGCACCTGCTGCTGGTGCGGGAGCTGGGGGCTCGGgtgctgatgctgctgctgtgacGGCTGGTGGACACAGGTCTCCCGGCACTGGAAATCATTGCACAGCACAAGCGGCTTCTGGTCGGGGTAGTCTTCACTCTCCTCCAGCAAACTGAGATTGTTAATGAAGTCGACATTGCCGCCGGGCTCCTGCTGCACGGAAGGGGCTGGTGACGAGGTGTTGGAGTTGGCAGGGTTAATAAACTCGGGTCGCGGCAGCGGCCAGGTGCAAGACCGGGGCCGTGAGAGCGGCTCAAAATCCGGGTCGATCTCCACCACTTGTTGCTGCGGAGCTTCAGCCATAATACTAGTACTAGTACTACCCAACTTTCACATAGACCTACGCAAAGGCACAaccagcaggaaaaaaaaaacttcgtCACTTCATAAACTTCTACTTATAAAAGTCACGGAACGGGAGCCAAAGCGGATCATAGAGATGAACAATCGccaggaaatgtgtttttaaggtcTGTTAGCGGCTCCTTTGGGTTTTGTTTACCTTGACAGGTTGTTTcgtctgttttttaaatccaggTTTAAGAAGATCGTATTCGTACCATGTCTGTCACCCCCAGTTGTTGCTTGTTGAGTGTTGATCTGCTAGACTGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13310 lncRNA upstream 49483 4376307 ~ 4377663 (+) True G10737
TU13309 lncRNA upstream 53425 4371487 ~ 4373721 (+) True G10736
TU13305 lncRNA upstream 90842 4336041 ~ 4336304 (+) True G10732
TU13277 lncRNA upstream 217501 4209381 ~ 4209645 (+) True G10707
TU13265 lncRNA upstream 448049 3977559 ~ 3979097 (+) True G10695
TU13384 lncRNA downstream 157175 4585234 ~ 4585486 (+) True G10798
TU13379 lncRNA downstream 158489 4586548 ~ 4587637 (+) True G10794
TU13444 lncRNA downstream 479747 4907806 ~ 4912418 (+) True G10853
TU13555 lncRNA downstream 1413169 5841228 ~ 5841821 (+) True G10939
TU13652 lncRNA downstream 2307551 6735610 ~ 6744358 (+) True G11021
AMCG00016055 mRNA upstream 221832 4201763 ~ 4205314 (+) True AMCG00016055
AMCG00016056 mRNA upstream 238190 4160355 ~ 4188956 (+) True AMCG00016056
AMCG00016057 mRNA upstream 298268 4126490 ~ 4128878 (+) True AMCG00016057
AMCG00016051 mRNA upstream 460960 3949181 ~ 3966186 (+) True AMCG00016051
AMCG00016054 mRNA upstream 542844 3883360 ~ 3884302 (+) True AMCG00016054
AMCG00016060 mRNA downstream 42003 4470062 ~ 4477338 (+) True AMCG00016060
AMCG00016061 mRNA downstream 67759 4495818 ~ 4499954 (+) True AMCG00016061
AMCG00016067 mRNA downstream 104265 4532324 ~ 4553950 (+) True AMCG00016067
AMCG00016066 mRNA downstream 142132 4570191 ~ 4576419 (+) True AMCG00016066
AMCG00016076 mRNA downstream 620149 5048208 ~ 5108992 (+) True AMCG00016076
TU12970 other upstream 1656476 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 1665427 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 1665427 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 1939395 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 2113987 2312598 ~ 2313159 (+) True G10350
TU13602 other downstream 2226653 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 2236027 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 4640222 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 4671361 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 4795353 9223412 ~ 9226245 (+) True G11545

Expression Profile