RNA id: TU13391


Basic Information

Item Value
RNA id TU13391
length 1153
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G10805
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4586723 ~ 4587875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCACATGAATACTTGAACTTTGAATACTTATGCTgtaatttttagttttatttgtttttgtcagtaaTTTTACTTGCCAGTACTATCTTTACAAATGTCAGTTGAGCTGCTGTCTCCTTGTTGGCCAGTGCTCTTCCTGCTGAGGGCCCAGACTTACAGACTGTGAACATCAACCCCTCAGGAAGGCTCTGCAGTGCGGTGTGTGCTGCTCTCTCACCCACCTCCTCTCTTGCTCCAGGTTATAGCAGCAGAGGGGGAGATGAATGCCTCACGGGCCTTGAAAGAAGCCTCCCTGGTGATTGCTGAGTCTCCCTCCGCCTTGCAGCTGCGCTACATGCAGACCCTCACCACCATCGCCAGTGAGAATAACTCCACCATCATCTTCCCCCTGCCTATTGACGTGCTGCAGACCTTCCTGACCAAGGGGAAGTGAACCAGTGGCGGAACTAGAGTTTTATAGCTGTATAGGGTGGCCAAGACTAATTTAGGGGGTCAATAgaccatgacagaaaatgtgtgtgtaacccTAACCTGGCATCTATGGAACATTAATGAATCCTATAATTGCTGATTAGAGGTAGAAGTGATAATTCACTTACCCCGGAGTTCTTCATTGTGGCAAATATTGTGGTCCAAAAGGGTTACTTCACTAGAACTCTTTAACATACTATGACTAGTCAGTGTCTCTACCTCGGAACTGCAGCTCAATTTCTttatctctcacacacacacacacacacatcaactaCGAGCCTAggtgttggggtaaaattgcttccagtaagatactagttaaaaattgctcttataagggtttccttgttcttatttggatttctctgctcagactgtggcagatagagataatttctactgccgtggacattctttagttaacgtaccaaaactatataacatgttcttatcagtatagtgtgtgctgtgtccttggtaccagtgcttccatgtctggatgaaatattgtttccccaattataaagaatacctcaTGAATTATTGCTTGCCGTGTCTCGGAACTGCaccgggacatatgccaagaaaatatcatccaggttcgaacctgctttgaaatattgcttgtagatgtataaaaggctgtgtgaaactttcaataaacgaagataaacgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13313 lncRNA downstream 213002 4371465 ~ 4373721 (-) True G10740
TU13308 lncRNA downstream 231427 4354853 ~ 4355296 (-) True G10735
TU13286 lncRNA downstream 416385 4166778 ~ 4170338 (-) True G10715
TU13268 lncRNA downstream 598768 3987653 ~ 3987955 (-) True G10698
TU13266 lncRNA downstream 607606 3977559 ~ 3979117 (-) True G10696
TU13392 lncRNA upstream 3945 4591820 ~ 4592077 (-) True G10806
TU13398 lncRNA upstream 34856 4622731 ~ 4623216 (-) True G10812
TU13410 lncRNA upstream 50575 4638450 ~ 4638659 (-) True G10821
TU13412 lncRNA upstream 51914 4639789 ~ 4641030 (-) True G10823
TU13464 lncRNA upstream 208952 4796827 ~ 4860892 (-) True G10867
AMCG00016073 mRNA downstream 4427 4576544 ~ 4582296 (-) True AMCG00016073
AMCG00016065 mRNA downstream 54460 4518570 ~ 4532263 (-) True AMCG00016065
AMCG00016062 mRNA downstream 69237 4507463 ~ 4517486 (-) True AMCG00016062
AMCG00016064 mRNA downstream 96058 4476339 ~ 4490665 (-) True AMCG00016064
AMCG00016063 mRNA downstream 134868 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016072 mRNA upstream 13066 4600941 ~ 4603273 (-) True AMCG00016072
AMCG00016071 mRNA upstream 38709 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016068 mRNA upstream 55465 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016070 mRNA upstream 157394 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016069 mRNA upstream 273610 4861485 ~ 4887805 (-) True AMCG00016069
TU13237 other downstream 666299 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1047530 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1551540 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1876038 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3603671 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6258959 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6259056 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7735286 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8274224 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1013455 True 297 lncRNA 0.43 1 NC_048574.1 42629803 ~ 42630099 (-)