RNA id: TU13398


Basic Information

Item Value
RNA id TU13398
length 486
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G10812
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4622731 ~ 4623216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttcagcttcaatcacatcgctggggagtttgttccagattgtgacaactgtctgtgtgaagaagtgtctccagttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgcagatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccatgtagtcttctctgttccagcgtgaaaaggttcagttccctcagtctctcagtaggactttcctttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtacacagtattccagattagctttaactagtgcattgtacattttgaacattactgcccttgttttaaattctacatttttgacaatataccctagcattgtgtttgccttttataTTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13392 lncRNA downstream 30654 4591820 ~ 4592077 (-) True G10806
TU13391 lncRNA downstream 34856 4586723 ~ 4587875 (-) True G10805
TU13313 lncRNA downstream 249010 4371465 ~ 4373721 (-) True G10740
TU13308 lncRNA downstream 267435 4354853 ~ 4355296 (-) True G10735
TU13286 lncRNA downstream 452393 4166778 ~ 4170338 (-) True G10715
TU13410 lncRNA upstream 15234 4638450 ~ 4638659 (-) True G10821
TU13412 lncRNA upstream 16573 4639789 ~ 4641030 (-) True G10823
TU13464 lncRNA upstream 173611 4796827 ~ 4860892 (-) True G10867
TU13465 lncRNA upstream 235842 4859058 ~ 4875011 (-) False G10867
TU13478 lncRNA upstream 280640 4903856 ~ 4907602 (-) True AMCG00016074
AMCG00016072 mRNA downstream 19458 4600941 ~ 4603273 (-) True AMCG00016072
AMCG00016073 mRNA downstream 40435 4576544 ~ 4582296 (-) True AMCG00016073
AMCG00016065 mRNA downstream 90468 4518570 ~ 4532263 (-) True AMCG00016065
AMCG00016062 mRNA downstream 105245 4507463 ~ 4517486 (-) True AMCG00016062
AMCG00016064 mRNA downstream 132066 4476339 ~ 4490665 (-) True AMCG00016064
AMCG00016071 mRNA upstream 3368 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016068 mRNA upstream 20124 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016070 mRNA upstream 122053 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016069 mRNA upstream 238269 4861485 ~ 4887805 (-) True AMCG00016069
AMCG00016074 mRNA upstream 281482 4904698 ~ 4929900 (-) False AMCG00016074
TU13237 other downstream 702307 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1083538 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1587548 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1912046 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3568330 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6223618 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6223715 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7699945 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8238883 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile