RNA id: TU13444


Basic Information

Item Value
RNA id TU13444
length 4156
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G10853
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4907806 ~ 4912418 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacacacacacacacacacacacacacacacacacatacacaccatgATCGCCTCTGGTTATCTGTGATTCAGCAGGTTTGCCAGTGCATCGGCGTATTTTAGACATCCTATCAATCAACAATAGTTTTTCCTATTAATCAGGACACATGGAAACATGCAACTAGAGTAGCTGGAACATCACTGCGCGTTTAGTTCAAGTGATTTGATCAGGCGACAATCGCTGGACAGCTATGTTACAACCTATGTTACACAATAACTGGGCAAAAAGAACAGTTACTTGCCTGGCATTACGTTTATCCACATCAGATCCCGCAAGGCTCACTCTGTACACTGTACTGGCCACATGTTTCAGATACCTGCAGAAGTTTTCTAGCTGGGGGATTGTTTGCTGCCCCTTCAGGCATGTAAACCATTGTCTTGGGAAGCAACTAATGACCTGCaaacatgcagaaaaaaataataataatatcccaaCATGCCTTGAGAGATCAGAGTTAAACATGTAGCGTGTGAGTGGTACAAGATTCTGCAGTGAAGGTCAAGTTACATTTGCTATTCTTattgaaacaatatttattatgaCTTGAGTGTGCATTTTGACATTGACTATTAATATTCTGTGTGAATCAGCCTGCTTGACacattgcataacattttcttggCTTCTCccaattttgttttcccccccaaaGACTAAGCAAACCCCAAAGTGTCCATAAATTAtacttgattgttttcctgtgtTCATTGTGACCTAGTATACCTTTCTAAtggtcaaaaagaaaaaatgaaaacacaaagcactcTGGTTTTCTGGATCTTTCAAACCCCAGTGATATTATAATATTCTACCAATCAAAAGGTGAATGTATGAGAATACTGCATGTTAATAGTAGTTTAAAAGCAGAAACCAAAACCTATAAAGCCATTATAACAGCTTGAAAATTACACAATCTACAATCTTACACTCTGGCTTTTCTCAATGCTGTCCTCTCCAGGCTCTGTGTTCTGAAGTGCCGAGAGGATGTAACGATTCACAATGCTGTCCACAGCCAGCTCCTTAAGGCTTGTATTAGACAGTATGCCATGCCACTGAAGAATGTTCCCCAAAAGCTAGGAAGAAAGAAAGTATGGTAATGAGGGTCAAAGACAAAGAATCACGAAAAATCTGAACCTAAACAAAACCAACTCCCCTCGTATTTTCATCCATTCAGTTCCCCCGAGGACAGAAGCAGCGCACTCACCTTCACACAAGACCAAAACTGTcgctggaaaaacaaatagggCCCCGAGTTCCTATTCTCCAGCACACTTCTTTGGATAGAGTGGCATAAAAACATCATTGTCTAATGTTCTTCGTGTTCTCATGACTATTGTTTTTAACAGCTcctaaaggaaagaaaaaatcaaatacatttaatacagtttaatgAATATTAAGAAATCAATACCCCCAAAGATCTAACCggataaacattttaaaaagttgcaaATGGGTAGTCCTATTGGTCTATTAAAAGATGCAAATATGCCAAAAGGAGTAATTTTTCTGATAACCTTTTAAGAGCTTAATgttaacatattaaaaaaaatgagaaCATGTACAAGTTTTTCTATACTAGTGAAAAGTCAACATGCAGAAAATAATTGCcggttttctttttattttaatcctaaTCTTTATGGTGTTTAAGAGCAGTATaagatttcaaataatgtatgaGCTGTTGTTGTAACCAAAagaattactttaaatagtctGAATAGTTTCTGCAATGACAATAACAAGCTTCGCTAAGAGGATAGCAGAACAGCCTGAAACCAGATCCAGTTCTGGCTGctagggaaaaggatctggatttGTCAACAGCAAAGGCGAGTCTATTCACCAACATGCAAACAGTGCTCTTCTGGTCCTTCAAGGGGTTAGTGTGATCAAAGCTTACATAACTGAAATACTGCAGATATCTTGTGTTTAGAAACCAATGGCTTACTATTTCAGATATGAACAAAGTGCTCTTTTTTACCCCCTGTGCTTTTAGTGTATGAAGAATTTGTTACAACATCAGGCACCCTCAATTAATGTGTGTTCTTtaacaatttgaaaatacattaagtaaaaaatacaaaagtaaaaaaaaactcattgtAAGAACTCCGCAAACATGCCACATAATCCTTACAGATCTGCTTGGTGCTTTGTGGAAACATGACTCCCCGGGTTGCCAGGTGGTTTATAACTGCAAATGCTCTCTAACTGTCTGCAGGACATAATGAGGTACCTGTGTGTTCCGGTTTTCCCCGTGCAGGACTGTGGGATAGCCCTTGACCAGCCTATTCATGAAGGCCACCATCTGCGCGGTCTGACTGCTGGACAAGGGATCCCACACCTGGTCTGTCAGAACTGGAAGTAACAATGGCAAAACCAGGACTGTAACAGGGCTCACTGAACAAAGCTCCACAAACAACCCACAATTGAGCCCTATTCGTGGacacacaaatgaaaagctTCCTACTGACtgtgtaaatgtaaagtgagCATATCCAAACATATCCAAATCAGACTTCAGAATGCAAAGCaagataattaaattgaatagaACCAAATTCCCTTTATCCCTGCTGCACCTGAGAGACTGACAATGGGTGGCAATGTGGACTGCTGAGcggagggtcatgggttcaatcccaggtggaaGACACTACTACAGTAAAAACCCATCTGTAACACCGGATTAGGGATTTTATATATTCACTtaaattgtggaaaaaaattaaacatggcTACCCTTTCTCTCCTATGTCAAAAAGCTCAGATGTCTCTCCCTTTCAtaattttcctttattaaataaaaacacttctcTCAATCTTTCCTGCTCTTTTTTTACCTATTTGTATAACTACAATTATATATGcgttttcagtttgttgaatTGTGTTTGATGTCtcatgcagtttattttgtgaaaaccaataaacaaagTTAAACTAAAAACAGATGTATAAATGGGTTATTGTTAGCATACAATTGTAGGTCACCCTGAATGTctgttgaaaaatacaattaacaaaaacataaatgcaacaatttcaaacattttcctGAGTTCacataaggaaatcagtcaattggaATAATTTCATTAGGCTTTAATATATGGACTTCAATTCTCAAGGTTTGAGGGAGTGTACAATTGGGAttctgactgcaggaatgtccacagAGGTACAGTCAcatcaagaccctggtgaggatgacaagccacagatgagcttcccCAAGACGGTTTCTGATAGTTCGTGCAGAATTGCTTCGGTTGTGCAAACCCAGTTTCGTTGTAGGTGGCTTATGGTAGAGATATGACCATTAAATTCAACAGCTCTGGTCATTCCTGCGGGCAATTGCATGCTGCCCCAAatcttgagacatctgtggcattgtgtgaCAGAACTTGTATTGGACCAAAACTTGTTCTTGTATTGTTcaccagcacaaggtgcacctgtgtaatgatcacgAGGTTTACCGgtttcttgatatgccacacctggaTTATCTTGGTGAAGGAGAAacgggatgtttctcatcaggGATAAGCTTTTTGTGTATATGGAAAATTTCACTTCAGCTCACGAAACATGGGACGAACtctttacatgttgtgtttatatttttgttcagtataaaaTAGAGAAGGAAAGCTTGGATTGAAAAGCTCACCTGCCAGTTTGGGCATTACGACTCGTTCAACAATCGATGGCAAGAGATTGATGTCGACATCCCCCTTCTGCATTTCCGATTGCTCCTCACAGCCATAGAACAGCAGCGATTCGAACCACAGCATATACTCAAAGTTGGGGCAGTTAGCCTACAGGAGAGaaatccagtttaaagtccacaaaacagcaaatatataacattgtacCTCACTTTGTTGCTTCAATTGTTAGGTAACacgtcttaattgcttaatttcccccaccccccaagaTTTTAAGGTTATTCATTGTAAGTCTAAGGACATCCCTTACCAGAGGTCTGCTTGCATTGGTACAGGGAGTTTTGTCAAGTCAGCAGAAATGCCAACGTCAAGCAAACTAGTTTCAACATTAGCGACTGAATGTGtgtagaaatacacacacacaattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13379 lncRNA upstream 320169 4586548 ~ 4587637 (+) True G10794
TU13384 lncRNA upstream 322320 4585234 ~ 4585486 (+) True G10798
TU13310 lncRNA upstream 530143 4376307 ~ 4377663 (+) True G10737
TU13309 lncRNA upstream 534085 4371487 ~ 4373721 (+) True G10736
TU13305 lncRNA upstream 571502 4336041 ~ 4336304 (+) True G10732
TU13555 lncRNA downstream 928810 5841228 ~ 5841821 (+) True G10939
TU13652 lncRNA downstream 1823192 6735610 ~ 6744358 (+) True G11021
TU13694 lncRNA downstream 2040195 6952613 ~ 6956605 (+) True G11052
TU13711 lncRNA downstream 2077709 6990127 ~ 6990569 (+) True G11067
TU13714 lncRNA downstream 2078231 6990649 ~ 6990900 (+) True G11069
AMCG00016066 mRNA upstream 331387 4570191 ~ 4576419 (+) True AMCG00016066
AMCG00016067 mRNA upstream 353856 4532324 ~ 4553950 (+) True AMCG00016067
AMCG00016061 mRNA upstream 407852 4495818 ~ 4499954 (+) True AMCG00016061
AMCG00016060 mRNA upstream 430468 4470062 ~ 4477338 (+) True AMCG00016060
AMCG00016055 mRNA upstream 702492 4201763 ~ 4205314 (+) True AMCG00016055
AMCG00016076 mRNA downstream 135790 5048208 ~ 5108992 (+) True AMCG00016076
AMCG00016077 mRNA downstream 1459981 6372399 ~ 6487517 (+) True AMCG00016077
AMCG00016079 mRNA downstream 1729240 6641658 ~ 6658898 (+) False AMCG00016079
AMCG00016080 mRNA downstream 1757888 6670306 ~ 6679037 (+) True AMCG00016080
AMCG00016078 mRNA downstream 1778335 6690753 ~ 6700886 (+) True AMCG00016078
TU13312 other upstream 479747 4427146 ~ 4428059 (+) True G10739
TU12970 other upstream 2137136 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 2146087 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 2146087 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 2420055 2485542 ~ 2487751 (+) True G10371
TU13602 other downstream 1742294 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 1751668 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 4155863 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 4187002 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 4310994 9223412 ~ 9226245 (+) True G11545

Expression Profile