RNA id: TU13464


Basic Information

Item Value
RNA id TU13464
length 1353
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G10867
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4796827 ~ 4875011 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgtgaagcggGGTGGgttatgttgttgtttatgtatatgaataattatatgtatattttgaatcatcatttgtcttttcaaaatattcagtACTATGGGCACAACCCATGGCTACTGTCCAACTTCTGAGCATGagtctgtatgtatgcatgagGAATTCCTCAACAAACCATTCATAAATTCGCCCATTCTGTAAATAAggctgtattatttaaaaatctgtccTGAAAGAGTAGCACATTGTGCAGCTTTCTAGAAGTACGGACTGTGATGCATTGAATAGACTCTTGCCACTAGTACCAAAAGCAAAAACTACCAAAGTGtgtcaaacatttttaattaatgttccCACCCCAATTAACCTGTAGTTCCACAATGTGTGCTGTCAGAGCTGGAAATTCATTTTCATTCGGCCTAAAAAGTGGCGGATGCCACAGAGGAAACTATATTATTGGACTGTTTGATATCCGTATTTCATGAAAGTGAATGtagagtattttattttccagtactGGCTAGAACCCATGCTTCAGTAATGCAAGAATGTAtgataatctaaaataaaaaataaaataaatgctttttgttaGGCTAAAGGTTCAAAAGAAACCGCTTGTTAcccttgtaaaatgtatacctACCTCAAATGAattccattaattaaattaagcgCATGTAtgaattgttaaattaattacaagTGTACTAACCTCCAACTATATTTACTTGCATATCTAATTTGTGTAAGACCAGAGTAAATGCATTGTGCCCATTGTTTATCAGATCTGTTACAAAAGTAACCGGTCTGGTCTGGTAAACAAAtgagacacactcactcaggTCTCACACGTTCATTTTCAGTGAACGTCGGTCACTTTAAACTTTGACATTTGAATAGTTGTCTGaaagattatataaaaataaacttgaacTGTTTTACTGTTTGAGGTAGAACAGAAAAGTTAATGTCTGACTAGTGAAATTATTGACCATTTTATCTCCACTTTGCAGCGATTCCTTCGTTCAGTTTTGATGAAGTGGTTGCATAACAGCAAAACCATGACACTGCATTAAACCATATTagccacaaacacacattgaaacAGATAAACCTACAAAAATATAACTGTAATACAGTTGATCCTATTGCCCAGTTCACACACATCCTCCATATTAAGATGGGTGATATTAGGAGGATATTCAATGAGAAACTCATGGATAAATACAATCTCAATGTTAGGAAAAcccatagacacacacacacatatatatcctAATGATGATATGCAGAGTgcagcatattattattattattattattattattattattattattattatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13412 lncRNA downstream 155797 4639789 ~ 4641030 (-) True G10823
TU13410 lncRNA downstream 158168 4638450 ~ 4638659 (-) True G10821
TU13398 lncRNA downstream 173611 4622731 ~ 4623216 (-) True G10812
TU13392 lncRNA downstream 204750 4591820 ~ 4592077 (-) True G10806
TU13391 lncRNA downstream 208952 4586723 ~ 4587875 (-) True G10805
TU13478 lncRNA upstream 42964 4903856 ~ 4907602 (-) True AMCG00016074
TU13491 lncRNA upstream 97187 4958079 ~ 4958278 (-) True G10883
TU13538 lncRNA upstream 132304 4993196 ~ 5065889 (-) True G10924
TU13540 lncRNA upstream 246025 5106917 ~ 5108966 (-) True G10926
TU13547 lncRNA upstream 720540 5581432 ~ 5581688 (-) True G10931
AMCG00016070 mRNA downstream 33478 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016068 mRNA downstream 132199 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016071 mRNA downstream 161200 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016072 mRNA downstream 193554 4600941 ~ 4603273 (-) True AMCG00016072
AMCG00016073 mRNA downstream 214531 4576544 ~ 4582296 (-) True AMCG00016073
AMCG00016069 mRNA upstream 593 4861485 ~ 4887805 (-) True AMCG00016069
AMCG00016074 mRNA upstream 43806 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016075 mRNA upstream 71932 4932824 ~ 5269754 (-) True AMCG00016075
AMCG00016086 mRNA upstream 1753813 6614705 ~ 6636697 (-) True AMCG00016086
AMCG00016081 mRNA upstream 1776440 6637332 ~ 6640537 (-) True AMCG00016081
TU13237 other downstream 876403 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1257634 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1761644 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 2086142 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3330654 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 5985942 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 5986039 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7462269 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8001207 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile