RNA id: TU13538


Basic Information

Item Value
RNA id TU13538
length 967
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G10924
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4993196 ~ 5065889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttttattcagCCACTGGGTGAAGCAATGCCCCAGTCTCCCATCCTGGAGTTTCTTTCCAAGCTAACGCCCTCTTCTTGCTGGATCCTGTGCTTGTGAGTCTGAAGAGACTGGCAGGCATTGACTGGCATCTTCTTGCAGAATTCGCCCAGAAGGCTTCTTTCTTCTTTGGATAAACTGGCTCAGCATTCTTAACTTACGTATTAATTCCTTTCACCGCCATGAATACTTAAGCTGCATTTCTCCAGACTCGCTAGCCTCCAGGCTGAAAAcaggatgttttatttatttattatctctaaagcaataataataacaaatgggTATCTCTCAGAACAATATGAAATACCTGGATTAAATTAAGAACATGGTGCACTCCCTTAGACTGTCTTATCCAGTTTAATCTTGTCCCTCCccaataaaacacttaaatggAAAAAGCCAGCTCATATTTTAGGGCAGAGTAATACTAGAATTGATCATAGCCCCTTGTTagctgttttttatatatatagggtTCATATCTAGTTAAACAACACCACATTAATTTGACCAACTAGCTCTGAATTTTAGTCCTgtaaatatagtatagtatagtcaCTGAATCTGATGTGGAGGTTtataaagagagaaagaaaatgaagtatTCCTGAAGttttcctatttaaaaatattatataggtTTCTTGTCTGAGTGCAGAACCCCTTACTTTGTTGATTCTGGATCATAAAGGGTCTTGGAGTCGTAAAGGATTTGAAATGTGCTGGTAAACCATACTTCAAAATGCTTGACATGTTTGTCAGTCATTTTTAGATCTCTAACATCATGCTGTGTGATACTTGGATTTTAATGTAACTGTAAGACGCTCTTTGTGTTTCCTcctgaatgttttaattgtatgttcTGCTGATATGTTACGTTTAAGTGTAAATGTCCCTTAAAATAAACTTCTAAGCATCAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13491 lncRNA downstream 34918 4958079 ~ 4958278 (-) True G10883
TU13478 lncRNA downstream 85594 4903856 ~ 4907602 (-) True AMCG00016074
TU13465 lncRNA downstream 118185 4859058 ~ 4875011 (-) False G10867
TU13464 lncRNA downstream 132304 4796827 ~ 4860892 (-) True G10867
TU13412 lncRNA downstream 352166 4639789 ~ 4641030 (-) True G10823
TU13540 lncRNA upstream 41028 5106917 ~ 5108966 (-) True G10926
TU13547 lncRNA upstream 515543 5581432 ~ 5581688 (-) True G10931
TU13550 lncRNA upstream 680447 5746336 ~ 5746567 (-) True G10934
TU13551 lncRNA upstream 685029 5750918 ~ 5751334 (-) True G10935
TU13556 lncRNA upstream 775588 5841477 ~ 5841704 (-) True G10940
AMCG00016074 mRNA downstream 63296 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016069 mRNA downstream 105391 4861485 ~ 4887805 (-) True AMCG00016069
AMCG00016070 mRNA downstream 229847 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016068 mRNA downstream 328568 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016071 mRNA downstream 357569 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016086 mRNA upstream 1548816 6614705 ~ 6636697 (-) True AMCG00016086
AMCG00016081 mRNA upstream 1571443 6637332 ~ 6640537 (-) True AMCG00016081
AMCG00016084 mRNA upstream 1581418 6647307 ~ 6669012 (-) True AMCG00016084
AMCG00016087 mRNA upstream 1670057 6735946 ~ 6773094 (-) True AMCG00016087
AMCG00016083 mRNA upstream 1717648 6783537 ~ 6787509 (-) True AMCG00016083
TU13237 other downstream 1072772 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1454003 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1958013 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 2282511 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3125657 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 5780945 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 5781042 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7257272 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 7796210 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile