RNA id: TU13540


Basic Information

Item Value
RNA id TU13540
length 1337
lncRNA type intronic
GC content 0.34
exon number 3
gene id G10926
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 5106917 ~ 5108966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGATgcttgcatattattttatttattcatttaaggAAAAACACAGTTGTAATtactgatgtgtgtgtttggtaaGTATGTGAATAATCATTcttaagaatatatatgtatttaagcaTGTTGCTTCAGTTTTTGGAACTGAACTTTGTAGAAGATGTAGTAGCCTTTGCTATACATGTATAGCAACTGATCTGCAGGGTTGTAATCAAGGTACACAAATCCTTCATATTGCTTATTGAAAGGAATGCTAATATAACTTTCCTCACCTGTCTGTGTATCAAATTTATAGAATATCTCCTCAGTGTAAAGGTTTAGTTGTCTTGTGGCATACAGAACTCCACACACCATGAAAGCATTGCTCACTCTTCGCCTAAATAAGTTTGTGTCCCACGTCTGCTCTAATGAAAaggtatttgtattaattttggaGAGGACTAGGTTACCCTTACTGGCTTCTGTTGCATAGATTACCCACAGCCCATTTTCATCTGCTGCAAAGTCAAAATCCTGATATGTGGCAGAACTGTAAGAGAACCTGCTGTTCCAAGCCGTGCCAGACAACACCCTGGTCTCAACGTTAAAAGTTGTTGCAtttattctgcatatatttccaCTATTATAGCAGTTATAATAGTAGTAATTCCCATACATGACATTGTTATTGCCATTCCCCTTGTTGTCATTTACCCAATTTTTATAGGAGTTTCTTAAAAGCAGGTTGGTGTAGTCTGAGTAAAGGTATATGTTGTTGGTGTAGGGGCTACTATACCCTGAATACCAGTAAATCTCCTCAAAGCCAGGCTTTGGCTTTGAATCTCTTCCCCATCCTCCATAAATGTAACCCTCACTAACATGGGCATTTAGCTGCACTATGTATGGCACGCTGACGTTAGTAATGCCTCCATGATTACAGGATCCAATTTCAGGCTTGAAAGATTCCTCACGCCACTTCTCGCAGTCCTCCAGTTTCTTCTGCAGTTTAATGAAGTCCCGCCGAATCACCAACAGGTTGTTCTTGTCATATCTCTCAAGCTGGTTCACCACTAATGTCATGTTTCGGATCTCTACATATAAATGGTCAAATATGACAGAAGAATTCACAGATTGTCTCAGCTCAGTGACCAGTTTCTCCATCTCCTGAAGCTCAATCCTCAGCATCTCAAACTCCAGCTGTGTGTACTTGTCAGGTTCCTTCTCCATTATCTCCACACGCACCGTCAGGTTCATCAGCTTCTGGACGTAGATGGCCAGTTTGCTTTCGTAGACTTTGAGCTGCAGCAACACAGTTAAAACAGTTAAAGCACTTCACTACACGCAGAGTGGCCCTGTTTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13538 lncRNA downstream 41028 4993196 ~ 5065889 (-) True G10924
TU13491 lncRNA downstream 148639 4958079 ~ 4958278 (-) True G10883
TU13478 lncRNA downstream 199315 4903856 ~ 4907602 (-) True AMCG00016074
TU13465 lncRNA downstream 231906 4859058 ~ 4875011 (-) False G10867
TU13464 lncRNA downstream 246025 4796827 ~ 4860892 (-) True G10867
TU13547 lncRNA upstream 472466 5581432 ~ 5581688 (-) True G10931
TU13550 lncRNA upstream 637370 5746336 ~ 5746567 (-) True G10934
TU13551 lncRNA upstream 641952 5750918 ~ 5751334 (-) True G10935
TU13556 lncRNA upstream 732511 5841477 ~ 5841704 (-) True G10940
TU13568 lncRNA upstream 780622 5889588 ~ 5889916 (-) True G10952
AMCG00016074 mRNA downstream 177017 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016069 mRNA downstream 219112 4861485 ~ 4887805 (-) True AMCG00016069
AMCG00016070 mRNA downstream 343568 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016068 mRNA downstream 442289 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016071 mRNA downstream 471290 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016086 mRNA upstream 1505739 6614705 ~ 6636697 (-) True AMCG00016086
AMCG00016081 mRNA upstream 1528366 6637332 ~ 6640537 (-) True AMCG00016081
AMCG00016084 mRNA upstream 1538341 6647307 ~ 6669012 (-) True AMCG00016084
AMCG00016087 mRNA upstream 1626980 6735946 ~ 6773094 (-) True AMCG00016087
AMCG00016083 mRNA upstream 1674571 6783537 ~ 6787509 (-) True AMCG00016083
TU13237 other downstream 1186493 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1567724 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 2071734 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 2396232 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3082580 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 5737868 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 5737965 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7214195 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 7753133 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile