RNA id: TU13604



Basic Information


Item Value
RNA id TU13604
length 502
RNA type TUCP
GC content 0.52
exon number 5
gene id G10981
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6664086 ~ 6665548 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCTTGGCCAGTTCAATCTCGGTTGCACCAGCTCCTGGCATGAGACGCTTATCCCGTACAAGAACTTTAAATGTGTTGACTCCATCGTCCACTGCCCGCTCAATATCGTCCATCAGGTTGTTCGTTGAGCCTCGGATGACGAGTGTAGAGATGGCACCATCCTCTTTTTCATGTTTGAAGACAACCACCTGGGTGTCGCCAACCTCGTTCAGGTACACGCTGTCACAGTGCCCCATCTCCTCAGGGGTGGGTGGCgtCAATCTGGGCAGGGCAACAGCTCCCAAAGTTTTGCACAATCTTCTTAAATCCCACTTAGAATTTAGCCTCACAACCATTAGCTGGTACTTGTTGGCATAGTGCAGGGCCATGTCTGCCACTTTGCCTCCCGTCACCACCACATTCGCTCCTGTGTCGGCGATGGCTTTGACCTGAGCCTCCATCATGTTCTCCTCTCCCTGGCTGAAGTTCATCAGCTCCTCTGCATTTTTTATCAAAACCGTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13555 lncRNA upstream 822265 5841228 ~ 5841821 (+) True G10939
TU13444 lncRNA upstream 1751668 4907806 ~ 4912418 (+) True G10853
TU13379 lncRNA upstream 2076449 4586548 ~ 4587637 (+) True G10794
TU13384 lncRNA upstream 2078600 4585234 ~ 4585486 (+) True G10798
TU13310 lncRNA upstream 2286423 4376307 ~ 4377663 (+) True G10737
TU13652 lncRNA downstream 70062 6735610 ~ 6744358 (+) True G11021
TU13694 lncRNA downstream 287065 6952613 ~ 6956605 (+) True G11052
TU13711 lncRNA downstream 324579 6990127 ~ 6990569 (+) True G11067
TU13714 lncRNA downstream 325101 6990649 ~ 6990900 (+) True G11069
TU13726 lncRNA downstream 356599 7022147 ~ 7024706 (+) False AMCG00016091
AMCG00016079 mRNA upstream 5188 6641658 ~ 6658898 (+) False AMCG00016079
AMCG00016077 mRNA upstream 176569 6372399 ~ 6487517 (+) True AMCG00016077
AMCG00016076 mRNA upstream 1555094 5048208 ~ 5108992 (+) True AMCG00016076
AMCG00016066 mRNA upstream 2087667 4570191 ~ 4576419 (+) True AMCG00016066
AMCG00016067 mRNA upstream 2110136 4532324 ~ 4553950 (+) True AMCG00016067
AMCG00016080 mRNA downstream 4758 6670306 ~ 6679037 (+) True AMCG00016080
AMCG00016078 mRNA downstream 25205 6690753 ~ 6700886 (+) True AMCG00016078
AMCG00016092 mRNA downstream 328448 6993996 ~ 7008772 (+) True AMCG00016092
AMCG00016091 mRNA downstream 356629 7022177 ~ 7024851 (+) True AMCG00016091
AMCG00016104 mRNA downstream 381572 7047120 ~ 7053548 (+) True AMCG00016104
TU13602 other upstream 2418 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 2236027 4427146 ~ 4428059 (+) True G10739
TU12970 other upstream 3893416 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 3902367 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 3902367 2759347 ~ 2761719 (+) True AMCG00016030
TU14219 other downstream 2402733 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 2433872 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 2557864 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 2893916 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 2933267 9598815 ~ 9599156 (+) True G11660

Expression Profile