RNA id: TU13975


Basic Information

Item Value
RNA id TU13975
length 1365
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G11287
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8093800 ~ 8095204 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaaacacagtattagtaaggtgttcctaataatcctttaggtgagtgtatattatatatatacattatgattttttggtttgatttgattgtctcatctctctgtatatatattttaatgtaatgtcatccagaaaaacaacagcaaaaacgTCATCAGTATCGTATAACAAGTTAGTCCTTGGCATGATTAGTTGAAAATTCTTCGTTTACTAGATAAAAAAGGTTTCAATTTCAGTAGAATAAAATGACTCCACCGATGGGGGAATTTAGTCTTGTAGAAACCTGGAGTAAGGTAAGAATGTAGTGGCCATTTGATAATAGATTGGCGCCACCCAGAGGCAGGAAAATTAGTTAATGAAAAGTTGGGATATACTGTAATCTGTAAATGTGATATGTTTTTAGCTGCAGTAAAAGTAATCTTTTCTTTCGGAAAAGTGTTTCTTCAGTGCATCTTTGTAAACCTATCGTTCGCCtgcttttgtctttcattttaaacatatttgtgtGGAACAGATCCAGCATGCAGCAACTGTAGCGAGTGAGGTAGGATTCAGGTTGTTTCAAAGTGTCACTGCCTTTTTTTGCTCCCTTCATCCTGGCTGGAATACTTAAATGttagacattttaaagcatcatTTTGCccctttttttctcctcccacTGCAGTGCATTCGTTTTTTGGGAAAGCAATAAAGTCCTGAAAGTCCTTTGGTTAGATtgaataatacagtaattaGCACTTAGCACATAGTAAAGGATTCCTTCCATGAAATCGTACTAGCAAAAATTagaagtgatttattttttcttttaataggcTGTTAAGAGAATGAGGGTGTTGCCAGTAAATGATGTGgcttgttaaaaatacatgtaggtgtgtgtttgtgtagggGGGTATTCTAATTATATACTCTGGGGTGGGGTGGATTTGACTGACACAATCAGTTTCCCACTTTGTGTtgtaactgatttaatttaactatCCATTGAATTACCTGATGgtatttgtacttattttagGCATTCAGCTTTAGTGTCTGGGCCTACTGTGCTCGTttagtttaaaacaattatgctTTAATTACACACACGGACACATACTGGCACCCAAGGGCCCATGTCATGTTTTCGTCTGTTTGCATGGGGTCAGTCAAGTCCCAGTGATTTCTCCAGAACAGCACAGTCTGACGATAACTGACAACGTTTGTGAGAAATCAGTATTCCATGTTTCTACACCCAGAGAACATTGTGGAGGTTTCTTGCCAGGATATGTAATGAACGTGTAGAAAGCTTTATATGAAATATCAAACGTGTACCACAAATGTTactaatgttgttgttgtttttttgcatacaGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13923 lncRNA upstream 125902 7967594 ~ 7967898 (+) True G11248
TU13921 lncRNA upstream 126489 7966988 ~ 7967311 (+) True G11246
TU13895 lncRNA upstream 335075 7758475 ~ 7758725 (+) True G11226
TU13879 lncRNA upstream 472243 7620862 ~ 7621557 (+) True G11210
TU13871 lncRNA upstream 496475 7527047 ~ 7597325 (+) True G11202
TU14002 lncRNA downstream 43551 8138715 ~ 8139223 (+) True G11308
TU14063 lncRNA downstream 338424 8433588 ~ 8475800 (+) True G11363
TU14218 lncRNA downstream 985782 9080946 ~ 9084621 (+) True AMCG00016136
TU14239 lncRNA downstream 1000629 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 1001425 9096589 ~ 9096811 (+) True G11507
AMCG00016113 mRNA upstream 1001 8082145 ~ 8092799 (+) True AMCG00016113
AMCG00016112 mRNA upstream 42080 8048792 ~ 8051720 (+) True AMCG00016112
AMCG00016117 mRNA upstream 48855 8034903 ~ 8044945 (+) True AMCG00016117
AMCG00016116 mRNA upstream 63582 8013819 ~ 8030218 (+) True AMCG00016116
AMCG00016115 mRNA upstream 222291 7847361 ~ 7871509 (+) True AMCG00016115
AMCG00016114 mRNA downstream 17857 8113021 ~ 8117376 (+) True AMCG00016114
AMCG00016121 mRNA downstream 79810 8174974 ~ 8178038 (+) True AMCG00016121
AMCG00016120 mRNA downstream 83543 8178707 ~ 8194672 (+) True AMCG00016120
AMCG00016123 mRNA downstream 103710 8198874 ~ 8202539 (+) True AMCG00016123
AMCG00016122 mRNA downstream 111675 8206839 ~ 8225134 (+) True AMCG00016122
TU13604 other upstream 1428252 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 1432132 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 3665741 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 5332081 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 973117 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 1004256 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 1128248 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 1464300 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 1503651 9598815 ~ 9599156 (+) True G11660

Expression Profile