RNA id: TU13978


Basic Information

Item Value
RNA id TU13978
length 1405
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G11288
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8093800 ~ 8095204 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATGttgaataatataattttatttttcaatttgattaCTGCtgtatgcaaaaaaacaacaacaacattagtAACATTTGTGGTACACGTTTGATATTTCATATAAAGCTTTCTACACGTTCATTACATATCCTGGCAAGAAACCTCCACAATGTTCTCTGGGTGTAGAAACATGGAATACTGATTTCTCACAAACGTTGTCAGTTATCGTCAGACTGTGCTGTTCTGGAGAAATCACTGGGACTTGACTGACCCCATGCAAACAGACGAAAACATGACATGGGCCCTTGGGTGCCAGTATGTGTCCGTGTGTGTAATTAAagcataattgttttaaactaaACGAGCACAGTAGGCCCAGACACTAAAGCTGAATGCctaaaataagtacaaatacCATCAGGTAATTCAATGGatagttaaattaaatcagttacaACACAAAGTGGGAAACTGATTGTGTCAGTCAAATCCACCCCACCCCAGAGTATATAATTAGAATACCCccctacacaaacacacacctacatgtatttttaacaagcCACATCATTTACTGGCAACACCCTCATTCTCTTAACAgcctattaaaagaaaaaataaatcacttctAATTTTTGCTAGTACGATTTCATGGAAGGAATCCTTTACTATGTGCTAAGTGCtaattactgtattattcaATCTAACCAAAGGACTTTCAGGACTTTATTGCTTTCCCAAAAAACGAATGCACTGCAgtgggaggagaaaaaaagggGCAAAatgatgctttaaaatgtctaaCATTTAAGTATTCCAGCCAGGATGAAGGGAGCAAAAAAAGGCAGTGACACTTTGAAACAACCTGAATCCTACCTCACTCGCTACAGTTGCTGCATGCTGGATCTGTTCCacacaaatatgtttaaaatgaaagacaaaagcaGGCGAACGATAGGTTTACAAAGATGCACTGAAGAAACACTTTTCCGAAAGAAAAGATTACTTTTACTGCAGCTAAAAACATATCACATTTACAGATTACAGTATATCCCAACTTTTCATTAACTAATTTTCCTGCCTCTGGGTGGCGCCAATCTATTATCAAATGGCCACTACATTCTTACCTTACTCCAGGTTTCTACAAGACTAAATTCCCCCATCGGTGGAGTCATTTTATTCTACTGAAATTGAAACCTTTTTTATCTAGTAAACGAAGAATTTTCAACTAATCATGCCAAGGACTAACTTGTTATACGATACTGATGAcgtttttgctgttgtttttctggatgacattacattaaaatatatatacagagagatgagacaatcaaatcaaaccaaaaaatcataatgtatatatataatatacactcacctaaaggattattaggaacaccttactaatactgtgtttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13922 lncRNA downstream 126495 7967071 ~ 7967305 (-) True G11247
TU13918 lncRNA downstream 221031 7872417 ~ 7872769 (-) True G11243
TU13891 lncRNA downstream 404838 7680911 ~ 7688962 (-) True AMCG00016110
TU13885 lncRNA downstream 472947 7620640 ~ 7620853 (-) True G11216
TU13884 lncRNA downstream 473803 7619698 ~ 7619997 (-) True G11215
TU13990 lncRNA upstream 24069 8119273 ~ 8123958 (-) False AMCG00016119
TU13994 lncRNA upstream 29786 8124990 ~ 8125383 (-) True G11300
TU14003 lncRNA upstream 41210 8136414 ~ 8138670 (-) True G11309
TU14008 lncRNA upstream 78485 8173689 ~ 8173974 (-) True G11314
TU14025 lncRNA upstream 96342 8191546 ~ 8194432 (-) True G11326
AMCG00016111 mRNA downstream 59048 8030925 ~ 8034752 (-) True AMCG00016111
AMCG00016110 mRNA downstream 340363 7680962 ~ 7753437 (-) False AMCG00016110
AMCG00016107 mRNA downstream 477502 7608507 ~ 7616298 (-) True AMCG00016107
AMCG00016108 mRNA downstream 519320 7529911 ~ 7574480 (-) True AMCG00016108
AMCG00016105 mRNA downstream 567546 7520166 ~ 7526254 (-) True AMCG00016105
AMCG00016119 mRNA upstream 24017 8119221 ~ 8124033 (-) True AMCG00016119
AMCG00016118 mRNA upstream 43530 8138734 ~ 8139063 (-) True AMCG00016118
AMCG00016125 mRNA upstream 260475 8355679 ~ 8357486 (-) True AMCG00016125
AMCG00016127 mRNA upstream 321046 8416250 ~ 8433185 (-) True AMCG00016127
AMCG00016129 mRNA upstream 339916 8435120 ~ 8494583 (-) True AMCG00016129
TU13237 other downstream 4173376 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 4554607 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 5058617 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 5383115 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 96342 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 2751630 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 2751727 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 4227957 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 4766895 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile