RNA id: TU14003


Basic Information

Item Value
RNA id TU14003
length 2257
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G11309
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8136414 ~ 8138670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGCAATTCCATATTTATTGTTGCATATTTGAACCCAGTGCACAGatgtaatgaaacaaaatacatgcacatacttattctcactctctctctcatctctcacacacacacacacacacacacacacacacacaaagcatttGCTCCATAATTTAAGCGGACAATGATATGAAGTTTTTAATTCTTCTTAAGATCACAGCTAATACTTCTGAATGACACCTACACTAAACATTGAAATACAGTTATAAACAGTACAATAGTGAAAGCATACATTGGCTTGCCCGTTGAGGcaggaaatacatatatattaaaaaaatcaaacaaggGCAATCTTATTTTCTTAACAGAGCTAAATAGCATACAGGGACTAAAAGGTTTCTTTTAGACTTATGAATGTGCTTACTGTTTATTGCTTTATGCTTTTGTTAAATACTACAGAAAATGTGATATGTGGTTTACCAGAACTGTGTagttgttttgttgtatatCAGCACAGGCAGTGGAAAACATTCATGcgattaagatttttttaagaatattttctCGTCAAAATTGTATAGAAACATTAATGGGACGAgaatattttcataatgtatcaTTTCCCCATAGttgaagcagaaacaaaataatagcCCTAACATGCATTGGATGTTTAGATACTTAGATGCTTAGACAATGTTTCAGTCATGATACAGGATAATAACATCCATAACTCTTCCTCACAATTTGGACATTCTGTAAATTAGCTGGACTACAATCCATTTAAAGTCAAGCTATAGTATTTGGAACAGATGTTGAGTGGATCTCCAGAAGTGGTTATGTTATGTTAATCCACATAATAGGAATAACACAATTTATTTGGTTGGTCTTTCGCTTCCCTGTTCTATAGTATGATCTCTATTCCCCTTCTCCTCCTATTACTACTACTCCTAGGATCTCTTTTTGCATTcccaaaacaataacataaaataaacaagtctCATTAGTCATCTGCTCTGATCTCTGTGACCTCAGTTGTCtcaatttaaaaagcaggaaagtataatattcatacattttagatttattcaAAGATATACACAACAAACAACCCCATAGACCAAACTTGACCTgatgagaaaaataagaaaatgtccaAACTGTTTTAGGGACAGGCTGAGGGGAAGAACAGGGTCATACAGCTTTGTCAGAAGACAAATCTCTTAATCATTGACTACAACACTTCAGcttcctccagagggaagaaaTTCCTCTCAATGTCAGACCCTTGTCAATTCTTGCCTGAAGACATGGAATACAAACATATGTAACTGATTCAGAAGCTTATGATTCTTACCAGACGACTGAAGGCAATCTTAAGTAAATTCAAAGTTGATTGAATCCTTGACATGAACTTAATCCCATGCCGCTGGTAGCTCCAAATGCAGACTACAGCTAAAGCATTTGTCTGTGAGATATTTGAGACTCCATTTACTGTAAAATTCCTGTAAAAAGTCTTTGAGCATCTTAAAACACTTCTGTGCATTTGCAGACtacttctattttatttatttatttgataacgGGATTTCATTTAAGAAGGAAAGGATAGCCTTAACCACTGAGTTAAGCAATCATGTAGAAGCTTCAATTTTGTAAGaccaattttatattttggtatATGCTCGGGAAATGTAtccctgttttaaaaaatatatccaatTAAGCATCCAAAGTTTCAGATCTTACTGTAAAGTGCAATTCAAATGCTTCTGACTGCTttccaattatttaaatatactttgtCATCCTCTGAACGAGAACAAAAGCTAAATATAGGTCACTCTTCCATCTGTTATATATCCCTTTAACATCAGATGTCACACTATTTGTTAGCTGCCATTTAGGCTATTCTGGATATCTTGTGTCTGGAGAAAAAACTGCAGCGGAACAATGAAGCATGCGTCCTATATTATAGAAATCAATTCAAACCAATTTCATGTTTCTTCTCATGGAAGAATACAAGATTGCTTTAGATCAAAACCTTTTTGAAACTAAATCTGACCTGCTTGCATATTTGttgaataaattacattgtGACTATAAGAAGTATTCACCGCCCTTGACATTTTGTTGGGTTACCACCTAATGTTTTGATGCATTGAAATGGGATTTGTGTCCCTTTgctttacacaacctactccacactgtcaatgtgggaaaaaaaaaatcaaatattcaattaaaaataaaaacctcagtTAAATGGGTTCtatc

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13994 lncRNA downstream 11031 8124990 ~ 8125383 (-) True G11300
TU13990 lncRNA downstream 12456 8119273 ~ 8123958 (-) False AMCG00016119
TU13978 lncRNA downstream 41210 8093800 ~ 8095204 (-) True G11288
TU13922 lncRNA downstream 169109 7967071 ~ 7967305 (-) True G11247
TU13918 lncRNA downstream 263645 7872417 ~ 7872769 (-) True G11243
TU14008 lncRNA upstream 35019 8173689 ~ 8173974 (-) True G11314
TU14025 lncRNA upstream 52876 8191546 ~ 8194432 (-) True G11326
TU14045 lncRNA upstream 182027 8320697 ~ 8321042 (-) True G11345
TU14046 lncRNA upstream 187512 8326182 ~ 8331803 (-) True G11346
TU14153 lncRNA upstream 688011 8826681 ~ 8827760 (-) False AMCG00016134
AMCG00016119 mRNA downstream 12381 8119221 ~ 8124033 (-) True AMCG00016119
AMCG00016111 mRNA downstream 101662 8030925 ~ 8034752 (-) True AMCG00016111
AMCG00016110 mRNA downstream 382977 7680962 ~ 7753437 (-) False AMCG00016110
AMCG00016107 mRNA downstream 520116 7608507 ~ 7616298 (-) True AMCG00016107
AMCG00016108 mRNA downstream 561934 7529911 ~ 7574480 (-) True AMCG00016108
AMCG00016118 mRNA upstream 64 8138734 ~ 8139063 (-) True AMCG00016118
AMCG00016125 mRNA upstream 217009 8355679 ~ 8357486 (-) True AMCG00016125
AMCG00016127 mRNA upstream 277580 8416250 ~ 8433185 (-) True AMCG00016127
AMCG00016129 mRNA upstream 296450 8435120 ~ 8494583 (-) True AMCG00016129
AMCG00016130 mRNA upstream 455420 8594090 ~ 8644348 (-) True AMCG00016130
TU13237 other downstream 4215990 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 4597221 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 5101231 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 5425729 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 52876 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 2708164 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 2708261 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 4184491 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 4723429 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile