RNA id: TU14025


Basic Information

Item Value
RNA id TU14025
length 1597
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G11326
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8191546 ~ 8194432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGAGGCTGCGCGTGCGCGGTGTGAAGACGACGCGCCTCTTCATCCCTCAGTCGGACCCGTCTGTCGCCGCGGATCACAAGCGGAGACAATGGACCGTGGCTCGGAAGAGGCGAAGATTGGATACGCAGCCATTGCTGAGCTGATGGGGTATCAACTATTTCTCTTTCAGAAAAACTCTCGAAGGAAACGAGCAAACTTGCAGGATACCAGAATAAGATGGTGGAACAAAATCTAGCCCTGAGTAGACTTAACAAGTCATTTGACCAGGCCCAGTCTCGTCTGGAGAGAGTAGCAACTGCGAAATGTGGCAGAGAGCTCCTGGACCTTTAAATCCGTGTACAACCCAGACAATCAGCACATAGAgactttgtaaatatttgtaatgggattctttgtatgtttatggaaattaaatatctctgtgagtttaaaaaaaactttgcagaacttttttgtttttagaatttCAAGTCTATACAATGGTGGTTATTTTATACGTGACAACTTTGCAAGGAACACACAAGACGTACTTCTGGTTGGCAGGAGTTCATGCTTCTCTCTAGCAAAACCACCGATTTATCTTTTATTGCTTATAGTCGCAGAAACGGCAGAATCCACCACAGCACACATTGTGTGTCCCACACGGACTAGGAATTTCATCACCACAGGTAATGGAGCACAGCAGCGGTCATGTGCTGCGtggaggttttctttttttagtttggCTAGTTTGTTTTCTAATGGGAGCCGTTGACATTTTTGATGTCGGTGTCCATCTACCACCATGATATCACACTATCACAGAGCTGGGGTAGAGGACGAACATAGTGCTTGCAAGAGAACAACAACATGGCCTGTGTCGAGTCCTGATGGAACAtatctgggatgaactggaatggCATTTTAGGCAGAGCGCACAGAAATCAATATGTCTGTCAAAAGCCTGCATAAGTCATAATGTCCATGTCCACACCTTAAAACACTGAACAAGtgctctgtgtgtatttgtcttttgtctCAATACATTTGGtaataagaatataaatacaagGAAACTTTTCTTCACCTACCATTTGGAATTTTGCCccacttaaaaagaaaatctgcataTATATTGCATACAGGAGCATCATTAATCTTCAAAACCCATCTTCATAGGGATGCATGTGGATACAAGTCTAATAAGGCTATGACACTGCACCCCACCCTTCCaaatgagctttttttttttcttccatacaGTATTTGTCACTTTAAAGTGCTTTCTAGCAGACCTCAAGTAGCagtgtaaacaaatgtattagaaTTCTCATGTGCACACTTGTtgaatctaaattaaataagcCTTTAACTGCTTTTATAATATTAAGGCTAGAAGTAAAGGGCACTAGAGTGGTACTGAGAGCAGGGTTACTTCCCCTcctttttctcttccttctccTGAATCTTGTAATTGTCCAGGAGCGCGTGGGCCGTTTCTTTGCCCGTCTTCTTCACCACCGCCTTGATCCCTAGGTTGTCGATGTTGAATGCCGTGACCCCCACGTTGATGGCCGAGTTCATGGCGTTATCTGTGGCCTGGCCGGCGGCAGCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14008 lncRNA downstream 17572 8173689 ~ 8173974 (-) True G11314
TU14003 lncRNA downstream 52876 8136414 ~ 8138670 (-) True G11309
TU13994 lncRNA downstream 66163 8124990 ~ 8125383 (-) True G11300
TU13990 lncRNA downstream 67588 8119273 ~ 8123958 (-) False AMCG00016119
TU13978 lncRNA downstream 96342 8093800 ~ 8095204 (-) True G11288
TU14045 lncRNA upstream 126265 8320697 ~ 8321042 (-) True G11345
TU14046 lncRNA upstream 131750 8326182 ~ 8331803 (-) True G11346
TU14153 lncRNA upstream 632249 8826681 ~ 8827760 (-) False AMCG00016134
TU14210 lncRNA upstream 861472 9055904 ~ 9059100 (-) True G11482
TU14314 lncRNA upstream 1119568 9314000 ~ 9314447 (-) True G11571
AMCG00016118 mRNA downstream 52483 8138734 ~ 8139063 (-) True AMCG00016118
AMCG00016119 mRNA downstream 67513 8119221 ~ 8124033 (-) True AMCG00016119
AMCG00016111 mRNA downstream 156794 8030925 ~ 8034752 (-) True AMCG00016111
AMCG00016110 mRNA downstream 438109 7680962 ~ 7753437 (-) False AMCG00016110
AMCG00016107 mRNA downstream 575248 7608507 ~ 7616298 (-) True AMCG00016107
AMCG00016125 mRNA upstream 161247 8355679 ~ 8357486 (-) True AMCG00016125
AMCG00016127 mRNA upstream 221818 8416250 ~ 8433185 (-) True AMCG00016127
AMCG00016129 mRNA upstream 240688 8435120 ~ 8494583 (-) True AMCG00016129
AMCG00016130 mRNA upstream 399658 8594090 ~ 8644348 (-) True AMCG00016130
AMCG00016131 mRNA upstream 462770 8657202 ~ 8671178 (-) True AMCG00016131
TU13237 other downstream 4271122 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 4652353 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 5156363 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 5480861 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 2652402 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 2652499 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 4128729 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 4667667 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 4667667 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile