RNA id: TU14063


Basic Information

Item Value
RNA id TU14063
length 4527
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id G11363
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8433588 ~ 8475800 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtCTATGTCTGAGATGAAAGCTCCCACCCCTCCCTATTGAAGAACTGTGCTGGAAATCAGACCGACTGAATCAATATCCAGATTTGTGAATTCACATGATACCAGtCTGTATCTGCGATGAACGCTTCCACCCCTCCCTATTGAAGAACTGAGTTGGAAATCAGACTGACAGAAACGATCTCCAGATTGGTGAACTCACATGATACAAGACAGAGCATATTCCTGGGCCAGAAACAGGGTGAGCCAGCCATCGTATCTGTACGCCCCTGTGGGTGAGTTACAGCATGAGAGATGATGGGCGCCCCACTAAGAAAGCTCCTCTGGAAGCGCTTGCTGAGCTCACCTTGACGTCGGAGGTGTCCCGCTGGCAGTTCCGCCACGACCGGGCGATGGAGGAGAACGTGCGGTCAGGGAAACATCTTATAGCCCATCCTATGGTCTGTCTCTTCACCATGGCAAACATCTTCCTAGCCTTGAAGCCTTCAATGAAATGAGGTTTGTCAGTATTGAAGGCCCCATTGTGGGAACAGTGCACTTAGGGGATTCAGTCACAGCTCCCCATACAGCACGGGATACAGGCTGGAGTCTTATCACTGTTGTAGTTCTGCAAGGCATATCTTATTAAAAGGCCAAAGGCCACACTGTGCATGTTAGAATTACAAGTGACGCCTGTTCTGCGAGCAGGGATCATACACAACACTGGAATGTGCCTCTgtacaagattaaaaaaaataaaggaaaggaaacaaggtgaaaaaaaaatctatgacaaaataaaaaggatggCGGCATCTTGCTTGATTTAAACAGGGTTTTCAATAATTCACGTGTGCAAAATTATACCATTAGGGCCTAAGAAAACACTGCGACTGAGCCAGAGATGGAAAATGATGGCAAACTGGGACGGGTTTCAAATTCAGCGTGTTCAACACATCCATTTTTATCAGGGAATGTTATTATAGTCAATGGAGTTTCTATGGAAATATGCCCCATTTACTGTAGCACAGCCTCGGGGTGAATTAATTATCTAGCTTCCTGGCTGTGGCGTACATATTGGCTATTTTAATTGGGCGACgttatattttattgcttcttCGAAGGCTTCCGAGCCGAAGCCAATGGAGATATCAGCTTTGAAAGATGAACACCACCGAACAGTTGGAAtctcaaagtgttttttgtttagcaGATGTTGTAGTCTGTAACATATCGCTTTTACCCGGAAGAAGTAAACAActgcaaaactaaaaactaatttgaaacattttcacactgtGTAGTAAACAATGGGATGTATCTGggacatttaaatgcaattatgtagaatatatttgtGCACATTCTTAAGACATTGCTTTTACAAAACTGCTCTAGGCATATTCCAGTCTATCCTTATGAGATGTCTTGCctgctttctgcattttttcGAATCAGCCAACAGTTCCAATGCACCCCGTCTGAAAGCTTCATGTgctgttaaatgtattgcatattTAGTAGCTATGATGATCAACTGTCTTGTGTGCCTGTACTTGATGGCTGTAACACTGAACACATATAAACCTGTCACGAAGGCGTCtgtaaaatgttattctgtggGCTTTATTTAGTTAGCATATGCCAGTTTACTGGCCTGTGAAATTCTCTCTGAAACCTCTGGGGTGGAACTTTAGCCCAATGAAATTGAGATGTTTAATTTTTCACCCCCCCTTAAagaattgcattgatttcaatttcaatgtcAATGCACCAACGTAAGAATCCATGAAAGCAGATCTCAGTCAGAACTTCTCACACAgggatttaattttgtttgcacATCTGTCCTTAATGTCCTTCACTGGAATCCAATTGTCTTTTAAATTGGGGCtcaaacatttctgtattttgggGGGGATTCTTTCACTATAAGTTTGAGaccaaataagaaataataaaaaaagacaggaaaatggTGTGCCATAAAAATATACCATTGATTTTTTAatcttgttatatatttattttattgaaaacagcAGACGTTGTTATACATATGCAGGGAATGCGTAACCACAGGCCCACATCCACCTCCATCCAACATttctgagtgtctgtctgttcaTTACGATCACTACAAAAAACTGGGTGAGGGGACAGTAACTGGTCCTTTTGACATTGACCTCTCgtagatgtttatttatttaatagtttatAATCGTCCCCTGTTTTCACTGATGTTTTTTGGCATCATAGTTCTGAAGGTATGGGTTAGTACAACTTGACATTTTCCTTCAGAAAACCAGCAATATTATTGGCCAACTCAGCACCAAGCCCCACCTCCAATGCGCACACTTACTATTCTCACGAGCCACTGCAGGGTGCACACGGAGGTGGAGTAGTGGGAGTTGTAGTGATAAGGGGGCGTCTGGTCGTCTTCCCATGTCTCGTAGCGCTCGGCGTAGAAGACCGCACGCTTGGGGTTCAGTGCTCCAATAGGCTGAAAGACACAGAGAAACCAACAGCCACAGATTATACAGTGAAACTACATAGAAAAACACCCCACACCTCCCTCACCATCcacattaattcatattgttATAGACAACCAAAACATGCCCTCATGTGTCCTATTGAATGGTCAGAACACAGCGTGAAATGTAAccaaagattttttttactaAGCTTTTGTTCTTCATTGTAATCCATAACATTAACTCCAGTTAATTACGCCAGTTaattatgttgtgtttatttactggTACACTGTGTACGCTTATGTATATTGATCCTTCACATGAGAAGGGAGAGTGTTCTTTTTAACCATGGGTTGGTACTCTGGCCTTTTTCTCTGGTAAATAATATAACTGTCAAACACTATCAAGCCATTTTTAATGAGCCTTtcgaaaaataaatgcatatatttaaaagaacatcACCACATATCAGACTTTcctcaattaaaaaagaaaatgacagaataattaggttcaattcagttcatttaaattaattctgatgcaacaacaaaaaaaaacacatcagtgcagattctttaaacaaatgtcTGAGCTAAACAATCACTCCAATCTCCTTTAAAACCAATTTGTGGGATTTCCCTGGATTGTATAGGCCTCTGCTTTGAGGAGGAATGTGCTCAATGGATTTTCTGATGGGTTCACTTCCAGTTCATGATTCCTCACTTTGATTGAATGCAACCATACCTTTATTGAAAGCTTTGCTATGGAGACCCAATACCTTTATTcagtaatgataaaaaaattaagatgaGATCAGTGTGGCATTTTTCCCCATTCCCTTAATTTCATTGGAATAAAGAAACAGAGGATAACACTATTGGCTTGCATACTgcacattgttttttctgtggCTCCTGATGAAGTGGCTTGGAAACAGAAATGAGGTTCatgtaaattgcatttaatgtaatctTTATTAATGTTTCATGCAGAGCCTTTACAGACCTCCATTAGATGTGGTGCAGAGAGGCCGAAGGAAAAGGTTGACTTTGGGATTTGTCTGTCAGACCCCATTATTTTCAAGGTGGCCTAAAAAGTTTTAGTGCTGGATTGGAGTCGGGGGAAACTTGATGAATATCTAAATCTTCTGTGGCGCGAGCATGCGAAGCAGTGAGCAGTGAAAAGTTTGGGGTAATCCACAGGGCTTAACCTTGCCTGACATGACTTAGACTTGTGGAACCAAACAGCATGCAGTTCAGCCATGTCTCCATCCTCTCTAAGCCCTCCTGAActactgtaaaatgttaaagtaaACATTGGCATTTTTGGAATTCATTCCGCATGCTGTGAGGCTGCACAGAATCAGTTTGAAACTTTTAACGTACAATATACAGCCCTTTACAAAACCTTCTCTATAATACAAACATTGTTACTTGATCTATATGAGATTACAAGGATATGCAACACGTTCTAACTACACCTTTAAAGTCTCTTTTTTAGCAGCAGTTTGAGGTAATAATTGAGCGGACAGAACAAATGAAGAAGCAGCCTGTTGCGGATGGCACTGTTACATGACCTGCGAGGAACTGACCTTCAGACTGTGAGATTTGTTTCAAATGCCAAAGGGACAGCCGAGTCCACAGCACTGAAATGTCAGAGGTGCAATGTCCGAGCGGTTTGGGACCATAGAGCTGAGGAGCTTGGATCTCCTCAACAATGGATTTGCCACTGCCACTGGAACTGTAAGGAGGGGATAACCAGTGGAAGACTTTGCTTAGAAGACATGTTCTATCCTATACTCCTCTCCCGAACCCTTTCCTTACTGGTCAAGGCCACAAGAGAAGGTTGCAGGAAATcccagaggaaaaaaataggATCTCTGATGGAAGGGCTCAGCACTCTGGGAGTCGAGGGGAAGTACATCATGTACTGAGAGGGGTTGACTTACTTGTGGCGGACCAGAAGTAAAGGGGTACTTCTTAAATGTGTGACTATGCCCTTCTGTTGGGACACTTTATATGATTTCCCCTTTGAGCATCCAATTAAAATTGTAGTATTGTGTACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14002 lncRNA upstream 294365 8138715 ~ 8139223 (+) True G11308
TU13974 lncRNA upstream 338384 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 338424 8093800 ~ 8095164 (+) False G11287
TU13923 lncRNA upstream 465690 7967594 ~ 7967898 (+) True G11248
TU13921 lncRNA upstream 466277 7966988 ~ 7967311 (+) True G11246
TU14218 lncRNA downstream 605146 9080946 ~ 9084621 (+) True AMCG00016136
TU14239 lncRNA downstream 619993 9095793 ~ 9096050 (+) True G11506
TU14240 lncRNA downstream 620789 9096589 ~ 9096811 (+) True G11507
TU14241 lncRNA downstream 621469 9097269 ~ 9097927 (+) True G11508
TU14243 lncRNA downstream 625111 9100911 ~ 9101316 (+) True G11510
AMCG00016124 mRNA upstream 107049 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016126 mRNA upstream 199556 8227131 ~ 8234032 (+) True AMCG00016126
AMCG00016122 mRNA upstream 208454 8206839 ~ 8225134 (+) True AMCG00016122
AMCG00016123 mRNA upstream 231049 8198874 ~ 8202539 (+) True AMCG00016123
AMCG00016120 mRNA upstream 238916 8178707 ~ 8194672 (+) True AMCG00016120
AMCG00016128 mRNA downstream 47661 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016132 mRNA downstream 313169 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016135 mRNA downstream 488406 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016136 mRNA downstream 597286 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016140 mRNA downstream 642102 9117902 ~ 9119438 (+) True AMCG00016140
TU13604 other upstream 1768040 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 1771920 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 4005529 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 5671869 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 592481 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 623620 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 747612 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 1083664 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 1123015 9598815 ~ 9599156 (+) True G11660

Expression Profile