RNA id: TU14239


Basic Information

Item Value
RNA id TU14239
length 258
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G11506
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9095793 ~ 9096050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGACTGTGTTCTTCAGTAACTTGAAAGCCTCTTGCAGATGTAGTTCTTTAGGGTTCGCAGAGAAGACGGCCAGCTCCCCAGCATGCACTGTGGGGATGGCTGCCGGTGGGCTGGGTCTCAGCTGCAGGTTGCTCACTGCCAGGAGGGAGAATGGCTTCACAATGTCCTCCACTGCCATCTGGCTCAGACCAGTCCAGCTCTTCACAGCTACGAAGTCCTGGCTGCCATTAACGAGATATACCACGGGGGCAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14218 lncRNA upstream 11172 9080946 ~ 9084621 (+) True AMCG00016136
TU14063 lncRNA upstream 619993 8433588 ~ 8475800 (+) True G11363
TU14002 lncRNA upstream 956570 8138715 ~ 8139223 (+) True G11308
TU13974 lncRNA upstream 1000589 8093800 ~ 8095204 (+) True G11287
TU13975 lncRNA upstream 1000629 8093800 ~ 8095164 (+) False G11287
TU14240 lncRNA downstream 539 9096589 ~ 9096811 (+) True G11507
TU14241 lncRNA downstream 1219 9097269 ~ 9097927 (+) True G11508
TU14243 lncRNA downstream 4861 9100911 ~ 9101316 (+) True G11510
TU14244 lncRNA downstream 7575 9103625 ~ 9104182 (+) True G11511
TU14313 lncRNA downstream 217948 9313998 ~ 9314434 (+) True G11570
AMCG00016136 mRNA upstream 6760 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016135 mRNA upstream 116888 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 286758 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016128 mRNA upstream 571253 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016124 mRNA upstream 769254 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016140 mRNA downstream 21852 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016143 mRNA downstream 141650 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016145 mRNA downstream 300552 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 398412 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016157 mRNA downstream 413974 9510024 ~ 9521955 (+) True AMCG00016157
TU14219 other upstream 23771 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2430245 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2434125 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 4667734 4427146 ~ 4428059 (+) True G10739
TU12972 other upstream 6334074 2759347 ~ 2761719 (+) True AMCG00016030
TU14242 other downstream 3370 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 127362 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 463414 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 502765 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2772775 11868825 ~ 11871735 (+) True G11921

Expression Profile