RNA id: TU14242



Basic Information


Item Value
RNA id TU14242
length 617
RNA type TUCP
GC content 0.32
exon number 1
gene id G11509
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9099420 ~ 9100036 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTGGTCAATTGGCCAGTATTAAAGATAAAATTATCACTTGTCCAGGTGGGCATGTAAATTAGCAAAGAAGCCTGCCCAACAGAACTTGGCACCTGCCCCTGTCTTAATATAgtttaagaacaaaaacaaaaacaaagtataaatCCTTCACCAATTATTGTTGCTTAATTTTTAGCATGAACTCCTTGCTTTTCTGCTAATCACGGCCACTCACCTTGAGCATGAGAGACTCCGGTACTTCCAGGGGTGAGCAGGCATCCTGGGAGCCGATGAGCTCAGCCCCGTGAGTCACAATTTTGCTGCCAACTACCAGCCTCCCTTTGCGCAGCATGGCGGTGAGCGGGGCATCCAGCAGAGCCTTGATGGAGTACCACCCATCTGTGACTTCAACAACACCCACCAGCCCGTCCATCCTGGTGTCTGCAGAGAGCGAGGGCTTGTTCTCGGTGGTGCCACGCGACTGGGACGAACCGGATGAGATTATCCGGCAGACACAGAGCACCAGAGTTTTCGCAGGGGTGTCGTCCTTCTCCGTTATCTTTTTTACCGCTGACCTTTGGCTCCCGTCCACCTCTACATCATACCTGCAGCAAAACCATCCGTACCCAGATAGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14241 lncRNA upstream 1493 9097269 ~ 9097927 (+) True G11508
TU14240 lncRNA upstream 2609 9096589 ~ 9096811 (+) True G11507
TU14239 lncRNA upstream 3370 9095793 ~ 9096050 (+) True G11506
TU14218 lncRNA upstream 14799 9080946 ~ 9084621 (+) True AMCG00016136
TU14063 lncRNA upstream 623620 8433588 ~ 8475800 (+) True G11363
TU14243 lncRNA downstream 875 9100911 ~ 9101316 (+) True G11510
TU14244 lncRNA downstream 3589 9103625 ~ 9104182 (+) True G11511
TU14313 lncRNA downstream 213962 9313998 ~ 9314434 (+) True G11570
TU14315 lncRNA downstream 230855 9330891 ~ 9333859 (+) True G11572
TU14444 lncRNA downstream 863928 9963964 ~ 9964237 (+) True G11672
AMCG00016136 mRNA upstream 10387 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016135 mRNA upstream 120515 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 290385 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016128 mRNA upstream 574880 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016124 mRNA upstream 772881 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016140 mRNA downstream 17866 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016143 mRNA downstream 137664 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016145 mRNA downstream 296566 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 394426 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016157 mRNA downstream 409988 9510024 ~ 9521955 (+) True AMCG00016157
TU14219 other upstream 27398 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2433872 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2437752 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 4671361 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 6337701 2759347 ~ 2761719 (+) False AMCG00016030
TU14288 other downstream 123376 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 459428 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 498779 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2768789 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 3678188 12778224 ~ 12781864 (+) False AMCG00016221

Expression Profile