RNA id: TU14244



Basic Information


Item Value
RNA id TU14244
length 558
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G11511
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9103625 ~ 9104182 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGGATCCCACTTGTCTTTGGAAGCTGGTGCCTGGTTAGATTGGAGGATCTCGGGCATTCCCATACGCACAATCTTCTTCTCGAGTGTCTTCCAAACCATGCACTCCTGCTCATTGCTGCGGCATCCTGTGGTGGGTAATGGGGACCCGACATGCTGCGGCAGACCTGCAGCCGTATTGATTTGAAGTCCAGCATCTGACACAGCAGCCTGTTCTTTGTAAGAAGACACAGAGGTACTGGGTCCTGCTGGAGGCTCGGGCAAGGGGCCACATTTCTCTCTTGCCCTGGTTTGTCCCTGCCTCTCTGGGTGGACACTTTTCTCTTTAGTGTGCTCAGGTTCTTTGAAGGAGCCGGGGGCTTTTTTGAAAGGAGGAACAAAGACACCGGAAGGTCTTTTAATCTCCTGAAAAGGGGGTCTCTTCTGCAGGTCAGGGCTGCACTGCTTGCGAAAGGGGGGCACAAACACTGCAGGTCTGGTGCTTGTCAGCTGGGATTCTTGGAAGGACGTGACTGAAGAAGTGCTCTGTGGTTCAGCAACCTTGATCTTCTTTTTATCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14243 lncRNA upstream 2309 9100911 ~ 9101316 (+) True G11510
TU14241 lncRNA upstream 5698 9097269 ~ 9097927 (+) True G11508
TU14240 lncRNA upstream 6814 9096589 ~ 9096811 (+) True G11507
TU14239 lncRNA upstream 7575 9095793 ~ 9096050 (+) True G11506
TU14218 lncRNA upstream 19004 9080946 ~ 9084621 (+) True AMCG00016136
TU14313 lncRNA downstream 209816 9313998 ~ 9314434 (+) True G11570
TU14315 lncRNA downstream 226709 9330891 ~ 9333859 (+) True G11572
TU14444 lncRNA downstream 859782 9963964 ~ 9964237 (+) True G11672
TU14446 lncRNA downstream 864360 9968542 ~ 9968783 (+) True G11674
TU14450 lncRNA downstream 904857 10009039 ~ 10009385 (+) True G11678
AMCG00016136 mRNA upstream 14592 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016135 mRNA upstream 124720 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 294590 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016128 mRNA upstream 579085 8523461 ~ 8524540 (+) True AMCG00016128
AMCG00016124 mRNA upstream 777086 8314143 ~ 8326539 (+) True AMCG00016124
AMCG00016140 mRNA downstream 13720 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016143 mRNA downstream 133518 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016145 mRNA downstream 292420 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 390280 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016157 mRNA downstream 405842 9510024 ~ 9521955 (+) True AMCG00016157
TU14242 other upstream 3589 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 31603 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2438077 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2441957 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 4675566 4427146 ~ 4428059 (+) True G10739
TU14288 other downstream 119230 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 455282 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 494633 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2764643 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 3674042 12778224 ~ 12781864 (+) False AMCG00016221

Expression Profile