RNA id: TU14314


Basic Information

Item Value
RNA id TU14314
length 448
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G11571
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9314000 ~ 9314447 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaagaaatccagaaaaacgcatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgatgtttggcaactcgaaccttcagctccctccacagattttctatgggattacgGTCTGgggactggctaggccactccaggacgttaatgtgcttcttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14210 lncRNA downstream 254900 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 486240 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 982197 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 992958 8320697 ~ 8321042 (-) True G11345
TU14025 lncRNA downstream 1119568 8191546 ~ 8194432 (-) True G11326
TU14397 lncRNA upstream 121355 9435802 ~ 9498753 (-) False G11633
TU14398 lncRNA upstream 181744 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA upstream 181744 9496191 ~ 9498753 (-) False G11633
TU14420 lncRNA upstream 229061 9543508 ~ 9543743 (-) True G11650
TU14430 lncRNA upstream 275288 9589735 ~ 9594953 (-) True G11658
AMCG00016148 mRNA downstream 24676 9267201 ~ 9289324 (-) True AMCG00016148
AMCG00016144 mRNA downstream 130090 9119568 ~ 9183910 (-) True AMCG00016144
AMCG00016142 mRNA downstream 197846 9111277 ~ 9116154 (-) True AMCG00016142
AMCG00016141 mRNA downstream 203193 9089169 ~ 9110807 (-) True AMCG00016141
AMCG00016139 mRNA downstream 258421 9051060 ~ 9055579 (-) True AMCG00016139
AMCG00016151 mRNA upstream 19246 9333693 ~ 9358730 (-) True AMCG00016151
AMCG00016152 mRNA upstream 91855 9406302 ~ 9410567 (-) True AMCG00016152
AMCG00016155 mRNA upstream 102075 9416522 ~ 9416725 (-) True AMCG00016155
AMCG00016154 mRNA upstream 105682 9420129 ~ 9427244 (-) True AMCG00016154
AMCG00016149 mRNA upstream 118183 9432630 ~ 9441739 (-) True AMCG00016149
TU14024 other downstream 1119568 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5393576 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5774807 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6278817 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6603315 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1532387 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1532484 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 3008714 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3547652 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3547652 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile