RNA id: TU14315


Basic Information

Item Value
RNA id TU14315
length 1336
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G11572
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9330891 ~ 9333859 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTtcaggaggggaaaaaacactttattgaaACGTCATACAATACCTAAATTATAATATAAGGCCTATTGGGAACAAAACCACACGTCACCCACCCTCGTCATGAAAACTAAAAGCAGTCATATTAGACCAGAGAACTTGTGGTGGGTATCTCAGAAATCAGGTTATATATTATTTCGGACATCTAACTTAAAATTGTCAATGTTATGATgagatttttaaatgaaatgaccCACATAAATCAAGGTTTTctgatgtttgttttctaatatttgCTCCATTAAAATAggtttagatttgtatttctctgCTCTAATGTTTGAGTTTTTGACTTAATGGGACTTAATGTCAGTGTTgaagcaaaattaaacaaattgaactTTTGTACACATTATactgtgattttaattgttttcatctCTTAACTggtaatacatatatttttaatacacattattattatttcaatgggGCTCCCAATGCTTTTAAACTCCAGTCCTCAAAAAGGCCACAGAGCCTTCTGTTATTCAATCTGAGAGGAACGTATCATATGAGATTATTCAGGaattagatttttctgtatatacatttttacatttcatcatTTTTATGACTCACCTGATTCAGAGTATTATATACACCCTTGTGTTGCCTGAAGAACAATGGTATAGATTTTGTTGTGAAGACTCAGTACCCCTAGAGGAGTTTGATGCTCTTGAGCGAGCCAAGCATTATCACAGGCTATGGGGAAAAAACCTGAATCGTCAGCTGAGGAACCTTCAGAAAGCTTCAGCCATCTACGCTGAAACGTAAGCAGGTTCTGGGTCAATTCTTCAGTCCACCGCAAATCTAATGCAGATTTCTCAGGGAGGATTTGCAAGCACTCTCTCATTGGGGTCTCAGTGGAGGTTCAAGCTCGAAAGCAGCTGGTGGCTCCAAATTAGGGAAGAACAGGGGAATAACATTTGCTGGTTCTAACAGCTGGtgatttttttgtgattttttttctctgtggccTAATTGTCCGCAAAGGAAGCTTTTTGTCCGTGTCCTCGAATGCCCTGTCAGTGTTAATGCACCGGCGTAGCACTCCAGTCTGCAGGGGTGTATAGGAACACACCAGACTAGTCTTGGGTGTGAATTGTTACAGGATTCTAGGTGGATATAGTCATTATAAGTCCTCTCTCGTGCCTCTGTGTGGCGTCGGTGGCAACGTGTCGTTTTTGTCGTCCGCTAACCACTTGTGAAAGACACTCACGGGATCAATGTTCCAGTGCTTGTGGAAAGAGATGGGCACCTGGTGAGCAAGATAGTCTTTGGCATAATCTTCAGGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14313 lncRNA upstream 16457 9313998 ~ 9314434 (+) True G11570
TU14244 lncRNA upstream 226709 9103625 ~ 9104182 (+) True G11511
TU14243 lncRNA upstream 229575 9100911 ~ 9101316 (+) True G11510
TU14241 lncRNA upstream 232964 9097269 ~ 9097927 (+) True G11508
TU14240 lncRNA upstream 234080 9096589 ~ 9096811 (+) True G11507
TU14444 lncRNA downstream 630105 9963964 ~ 9964237 (+) True G11672
TU14446 lncRNA downstream 634683 9968542 ~ 9968783 (+) True G11674
TU14450 lncRNA downstream 675180 10009039 ~ 10009385 (+) True G11678
TU14453 lncRNA downstream 763839 10097698 ~ 10098122 (+) True G11681
TU14456 lncRNA downstream 802069 10135928 ~ 10136190 (+) True G11684
AMCG00016143 mRNA upstream 44016 9237700 ~ 9286875 (+) True AMCG00016143
AMCG00016140 mRNA upstream 211453 9117902 ~ 9119438 (+) True AMCG00016140
AMCG00016136 mRNA upstream 241858 9073086 ~ 9089033 (+) False AMCG00016136
AMCG00016135 mRNA upstream 351986 8964206 ~ 8978905 (+) True AMCG00016135
AMCG00016132 mRNA upstream 521856 8788969 ~ 8809035 (+) True AMCG00016132
AMCG00016145 mRNA downstream 62743 9396602 ~ 9406042 (+) True AMCG00016145
AMCG00016156 mRNA downstream 160603 9494462 ~ 9498792 (+) True AMCG00016156
AMCG00016157 mRNA downstream 176165 9510024 ~ 9521955 (+) True AMCG00016157
AMCG00016158 mRNA downstream 198243 9532102 ~ 9550216 (+) True AMCG00016158
AMCG00016159 mRNA downstream 250504 9584363 ~ 9591639 (+) False AMCG00016159
TU14288 other upstream 104646 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 230855 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 258869 9068281 ~ 9072022 (+) False AMCG00016136
TU13604 other upstream 2665343 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 2669223 6654712 ~ 6661668 (+) True AMCG00016079
TU14381 other downstream 225605 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 264956 9598815 ~ 9599156 (+) True G11660
TU14724 other downstream 2534966 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 3444365 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 4288020 13621879 ~ 13627711 (+) True G12348

Expression Profile