RNA id: TU14398


Basic Information

Item Value
RNA id TU14398
length 1616
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G11633
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9435802 ~ 9498753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaaaacaaaaccattttttaaaaaaagggtttatttactTCAGAAGCATTCAGAATGTCAACAAAAacagctgcttttttttctccttgcaATTACAGAGTGGTATTCAAAGTACAGTAAAAGAATTTTATGATAcggcaaattaaaaaaataaaaataaaaacacaaatactggAAACAAACTACAACCCCACGTAAAACTAGATTTTGTGCTGTGCACCACCAGAAAACCTGCAACTTCCATGCCATTTTACAACCCCCTTAAACTGTACCAGGCAAGGTTAGTGGCTTAGGAACTAccactaaaaacataaaataaaaataaaaaataaaaaaaatacagggcTATCTAAAGACACTTCCGTAGTGTtatctatacaaaataaagaaaagaaaaagaaacactgtaCAGCTTAAAAACAGATCATATACACagccttacatttttttttttctttgttttttgtattttttttttttttttttttaaggagtgAAGTGTGTACAGGGGGGttaaatgctttataaacaAGAAACTAAGCTCTAATAGTAACTGATctattcatcatcatcttcctcatcatcatcatcctcctcCTCGTCATCATCGTCGTCGTCATCGTCATcatcgtcctcctcctccttcttcttcttggccTTTTCCACCTTGGCAGGTGCTTTCTTGGCAGGTGCCTCGGGCTTGCCCTTGGCACGGTAGGCAGCAATTTCCTTTTCGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCTCGTATGGCTGCTTGTCCTCAGGGGCGGTCTTATTCCACATCTCTCCCAGTCTTTTGGCAACATCCCCAATGGACAATCCGGGGCTCTCGCCTTTAACTTTTGGGCGAAAGTCAGCGCAGAATATGAAGAAAGCACGGGGGCCTTTTTGGTGCGTTGGGGTCTTTtgtcctcttcttcttctctcccTTGGGTGGTATGTAGGACTTCATTTCTCTTTCATAACGCACCTTGTCTAGTTTTGCAAGGTCTTCAAACTTGCCCTTCTCCTTGGCAGACATAGTCTTCCACCGCTCAGAGCACTTCTTTGAGAAATCAGAGAAGTTGACAGAGGCATCAGGATGCTTCTTCTTGTGCTCCTCCCGGCAGGTCTGCACGAAGTAGGCATACGAGGACATCTTGCCTCTTGGCTTTTTCGGATCACCTTTACCCATCTTGGATTAGTTATCTAAAGGCAATAACGCACAGGTCAGACGGCTGCACCCCGGCGCTGCTCAAGCAGCCGCGGAGGAAACGATTCCAGCGCCGAGCCGCGGCTCAAGTCGCaactctgctgctgctgctgccagccTCTCTTGCGACCGTTTCCTCTCAACTGGCTTCgggacagaaagaaagaaaggaaagagagagagagagatcccgGACTAAACATGTCCGCTTCCCAACTTCCCAGCAAACAACAAGGCAGAAACAGCGTCCAGCGCAGGACTCACCCGTCCCTGCGCAGCGGCAGCCCTGCCCGGCTAACCAGCACTAGCGCTGAGGTATAAGTTTTCATTGCGTTTTAAAACCATGTCCAAACaccttttttttctaaagcctAGAAGTGTAAACCTAAAAACGAaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14314 lncRNA downstream 181744 9314000 ~ 9314447 (-) True G11571
TU14210 lncRNA downstream 437091 9055904 ~ 9059100 (-) True G11482
TU14153 lncRNA downstream 668431 8826681 ~ 8827760 (-) False AMCG00016134
TU14046 lncRNA downstream 1164388 8326182 ~ 8331803 (-) True G11346
TU14045 lncRNA downstream 1175149 8320697 ~ 8321042 (-) True G11345
TU14420 lncRNA upstream 44755 9543508 ~ 9543743 (-) True G11650
TU14430 lncRNA upstream 90982 9589735 ~ 9594953 (-) True G11658
TU14434 lncRNA upstream 197020 9695773 ~ 9696054 (-) True G11662
TU14447 lncRNA upstream 469824 9968577 ~ 9968783 (-) True G11675
TU14449 lncRNA upstream 491854 9990607 ~ 9991140 (-) True G11677
AMCG00016147 mRNA downstream 6573 9478790 ~ 9489618 (-) True AMCG00016147
AMCG00016150 mRNA downstream 20673 9468346 ~ 9475518 (-) True AMCG00016150
AMCG00016146 mRNA downstream 31800 9461493 ~ 9464391 (-) True AMCG00016146
AMCG00016153 mRNA downstream 39646 9452820 ~ 9456545 (-) True AMCG00016153
AMCG00016149 mRNA downstream 54452 9432630 ~ 9441739 (-) True AMCG00016149
AMCG00016162 mRNA upstream 177185 9675938 ~ 9683998 (-) True AMCG00016162
AMCG00016161 mRNA upstream 185413 9684166 ~ 9685154 (-) True AMCG00016161
AMCG00016166 mRNA upstream 208518 9707271 ~ 9711998 (-) True AMCG00016166
AMCG00016164 mRNA upstream 213380 9712133 ~ 9713118 (-) True AMCG00016164
AMCG00016165 mRNA upstream 268462 9767215 ~ 9767922 (-) True AMCG00016165
TU14024 other downstream 1301759 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5575767 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 5956998 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6461008 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6785506 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1348081 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1348178 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2824408 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3363346 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3363346 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile