RNA id: TU14430


Basic Information

Item Value
RNA id TU14430
length 1323
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G11658
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9589735 ~ 9594953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaaaaaaaaaaaaaaaaaaaggaataaaaaaaataacatcaagGTATACTTCATTATGATTTACCTTCTGGCTTTGATTGCAAGCACCATTAACAGTTATACTATACAAGAAAAGGTTAATAAAATCTTATGGCAGAGATGTGCACTTCCTCTAGGAGTCATTTAAAACCATTCTGTGCAGCTGGACAACACCGGGCCATGAAATTAGTTGTGTGTGATTGCAGAGAAATTCATTATGTCAATATACAGTGACAAAATATAGGAAGAAAAGAAGCCGCTTGGATTCTTTAGCAGGCTTTCTGTTATCAACAATAAACCGATCATTTAATAAAAGCTTCCTTTCCCGTGTTAAGGCTAGGAAATGCACTCAAGGTACTTGGCAGAATTATTCCCTAATCTGCAGTTTAAGAATGCATTCAGGAGATCTAAAATCATGTCGTCAGTCTTCTTGCCGAGTGTTACCAGACTTTAGAGGCACATCAATGTGTAGTCTGCCATAGCGCTTAAAATAGTGTGTCCCCAAACAGGATTTCATAATTTTAGTGGTTAAATGAACTGCTAGAATTATTGGGTACAGAAAAACCCCAACCACCCACTCATACAGTATCAGATCTTATTGTGTCGTTGAAAAAGTTTGGTGAAGGGGGTTtctgatacaaataaaaataactgcataaaactgaaattgtaatCCCCTTCTCCACCCGCCACCCCCATCCAGTATTACCGAACTGGAGTACTTACTCTTTAACTACACTAACAAAAAAGATCAGGTGCAAACTAGCTTGGTTCAAGCGAGATGGATGCATATATTCCTGTCATGAACAATTAAGACACACTGTAACAATCCAAGAGTGCAATATGCATAACCAGTCTGCCCGTATTGAAAGTGACACAGCACTGGGGGAACTGCTTTTCTGTTAATGCCACAatctcttttctttatttattttttccaggaTTCTATGGAGGCAAACCAGTTTAGGAGGAGGCATAAGcattgaaacagaaaatgagaTGCATGACACTGAGCAATGATCCAGGTCTGGTTAAATctcctttctcctttttttcttttcttttctggttttggttttctgttGTCGTGGTGGTGGCTGTTATAAACCAACTGCCTCCTAAGGGTCCTTGAAGCAAAATTATGTACGTCTATTTCAGCAGCATGAAAGACGAAAGACATCGTGGTTGACAGAAATAATGATGTATTTACAGGATCACGCAGCAATTGCTTTCTCCAGTCTTTTCACGGTTCCTCTGACCTAAAAGGTGAAGAGAATAGTTTAGAgatcttgtaaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14420 lncRNA downstream 45992 9543508 ~ 9543743 (-) True G11650
TU14397 lncRNA downstream 90982 9435802 ~ 9498753 (-) False G11633
TU14398 lncRNA downstream 90982 9496191 ~ 9498753 (-) True G11633
TU14399 lncRNA downstream 90982 9496191 ~ 9498753 (-) False G11633
TU14314 lncRNA downstream 275288 9314000 ~ 9314447 (-) True G11571
TU14434 lncRNA upstream 100820 9695773 ~ 9696054 (-) True G11662
TU14447 lncRNA upstream 373624 9968577 ~ 9968783 (-) True G11675
TU14449 lncRNA upstream 395654 9990607 ~ 9991140 (-) True G11677
TU14452 lncRNA upstream 419247 10014200 ~ 10014451 (-) True G11680
TU14460 lncRNA upstream 642542 10237495 ~ 10237800 (-) True G11688
AMCG00016147 mRNA downstream 100117 9478790 ~ 9489618 (-) True AMCG00016147
AMCG00016150 mRNA downstream 114217 9468346 ~ 9475518 (-) True AMCG00016150
AMCG00016146 mRNA downstream 125344 9461493 ~ 9464391 (-) True AMCG00016146
AMCG00016153 mRNA downstream 133190 9452820 ~ 9456545 (-) True AMCG00016153
AMCG00016149 mRNA downstream 147996 9432630 ~ 9441739 (-) True AMCG00016149
AMCG00016162 mRNA upstream 80985 9675938 ~ 9683998 (-) True AMCG00016162
AMCG00016161 mRNA upstream 89213 9684166 ~ 9685154 (-) True AMCG00016161
AMCG00016166 mRNA upstream 112318 9707271 ~ 9711998 (-) True AMCG00016166
AMCG00016164 mRNA upstream 117180 9712133 ~ 9713118 (-) True AMCG00016164
AMCG00016165 mRNA upstream 172262 9767215 ~ 9767922 (-) True AMCG00016165
TU14024 other downstream 1395303 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 5669311 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 6050542 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 6554552 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 6879050 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 1251881 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 1251978 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 2728208 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 3267146 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 3267146 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile