RNA id: TU14473


Basic Information

Item Value
RNA id TU14473
length 296
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G11701
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 10329642 ~ 10329937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAATcacagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcaaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggggactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggattACCCATCcacaacccattttcaatgcc

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14472 lncRNA downstream 51 10329146 ~ 10329591 (-) True G11700
TU14471 lncRNA downstream 553 10328719 ~ 10329089 (-) True G11699
TU14460 lncRNA downstream 91842 10237495 ~ 10237800 (-) True G11688
TU14452 lncRNA downstream 315191 10014200 ~ 10014451 (-) True G11680
TU14449 lncRNA downstream 338502 9990607 ~ 9991140 (-) True G11677
TU14486 lncRNA upstream 186615 10516552 ~ 10516762 (-) True G11712
TU14507 lncRNA upstream 382125 10712062 ~ 10712266 (-) True G11733
TU14508 lncRNA upstream 385382 10715319 ~ 10715527 (-) True G11734
TU14516 lncRNA upstream 515249 10845186 ~ 10845402 (-) True G11741
TU14529 lncRNA upstream 577916 10907853 ~ 10908076 (-) True G11751
AMCG00016173 mRNA downstream 211423 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016171 mRNA downstream 409868 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016172 mRNA downstream 424700 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016167 mRNA downstream 457217 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016169 mRNA downstream 495360 9833338 ~ 9834282 (-) True AMCG00016169
AMCG00016176 mRNA upstream 504475 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016178 mRNA upstream 671803 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016177 mRNA upstream 704329 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016179 mRNA upstream 894519 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016185 mRNA upstream 1114418 11444355 ~ 11445310 (-) True AMCG00016185
TU14024 other downstream 2135210 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 6409218 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 6790449 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 7294459 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 7618957 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 516897 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 516994 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 1993224 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 2532162 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 2532162 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile