RNA id: TU14508


Basic Information

Item Value
RNA id TU14508
length 209
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G11734
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 10715319 ~ 10715527 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCTGTAGACTTTGCACTTGGCAACAGTTATAAACCGGttctttacaattgtttattaaaaagttgttgatcgtagctggaaaatgaataaaatctggAGGGTTTCCGTAAGAATCCAAAAATTCGCCGCGATGATCTTCCGTCAGATAAATAGCCAGCCAGTGCTCTCCAGGCATGGTTTCAGGGTGagtgttaattataaacatgG

Function

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process
GO:0030903 notochord development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14507 lncRNA downstream 3053 10712062 ~ 10712266 (-) True G11733
TU14486 lncRNA downstream 198557 10516552 ~ 10516762 (-) True G11712
TU14473 lncRNA downstream 385382 10329642 ~ 10329937 (-) True G11701
TU14472 lncRNA downstream 385728 10329146 ~ 10329591 (-) True G11700
TU14471 lncRNA downstream 386230 10328719 ~ 10329089 (-) True G11699
TU14516 lncRNA upstream 129659 10845186 ~ 10845402 (-) True G11741
TU14529 lncRNA upstream 192326 10907853 ~ 10908076 (-) True G11751
TU14532 lncRNA upstream 227999 10943526 ~ 10943774 (-) True G11754
TU14537 lncRNA upstream 262656 10978183 ~ 10978394 (-) True G11759
TU14583 lncRNA upstream 625343 11340870 ~ 11341449 (-) True G11801
AMCG00016173 mRNA downstream 597100 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016171 mRNA downstream 795545 9904963 ~ 9919774 (-) True AMCG00016171
AMCG00016172 mRNA downstream 810377 9904043 ~ 9904942 (-) True AMCG00016172
AMCG00016167 mRNA downstream 842894 9863271 ~ 9872425 (-) True AMCG00016167
AMCG00016169 mRNA downstream 881037 9833338 ~ 9834282 (-) True AMCG00016169
AMCG00016176 mRNA upstream 118885 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016178 mRNA upstream 286213 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016177 mRNA upstream 318739 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016179 mRNA upstream 508929 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016185 mRNA upstream 728828 11444355 ~ 11445310 (-) True AMCG00016185
TU14024 other downstream 2520887 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 6794895 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 7176126 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 7680136 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 8004634 2710399 ~ 2710685 (-) True G10420
TU14520 other upstream 131307 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 131404 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 1607634 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 2146572 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 2146572 12862099 ~ 12862870 (-) False AMCG00016226

Expression Profile