RNA id: TU14573



Basic Information


Item Value
RNA id TU14573
length 310
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G11792
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11237358 ~ 11240804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACACAAAGGTGCATTCTTACTTCATTGAAGGAAGCCAAAAGGCCTGATGTCTGACTGGAAAACCCATATCTTTTCTCAATGGTGGAAATGGAGCTCTTCAGATACCCAGAGACCAGAAGCTGTGCAAGCTGAAGAAGCCCATGGCAGAAgacaaaaaACCTTTATGTTGTTAAAGGGATTTCGGCATCTTggtgttctctctctttcagcaGAGCCAGTGTGTTGTGGTTTTTCAGCAGTCATCTTGTCCCTTCGTAAATTCACCTTAAATGTTGAGAACAGAACAAACTAATCAGAAATGAAGCAATT

Function


GO:

id name namespace
GO:0060113 inner ear receptor cell differentiation biological_process
GO:0035315 hair cell differentiation biological_process
GO:0042490 mechanoreceptor differentiation biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0009913 epidermal cell differentiation biological_process
GO:0060563 neuroepithelial cell differentiation biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14559 lncRNA upstream 49276 11186392 ~ 11188082 (+) True G11778
TU14555 lncRNA upstream 92653 11144493 ~ 11144705 (+) True G11774
TU14540 lncRNA upstream 234712 11001450 ~ 11002646 (+) True G11761
TU14518 lncRNA upstream 389113 10846907 ~ 10848245 (+) False AMCG00016174
TU14517 lncRNA upstream 391313 10845821 ~ 10846045 (+) True G11742
TU14580 lncRNA downstream 67314 11308118 ~ 11308357 (+) True G11798
TU14597 lncRNA downstream 242758 11483562 ~ 11483793 (+) True G11813
TU14639 lncRNA downstream 477279 11718083 ~ 11719651 (+) True G11846
TU14640 lncRNA downstream 478975 11719779 ~ 11720408 (+) True G11847
TU14641 lncRNA downstream 481264 11722068 ~ 11722558 (+) True G11848
AMCG00016174 mRNA upstream 279326 10844127 ~ 10958032 (+) True AMCG00016174
AMCG00016175 mRNA upstream 394899 10834329 ~ 10842459 (+) True AMCG00016175
AMCG00016170 mRNA upstream 1423600 9812815 ~ 9813758 (+) True AMCG00016170
AMCG00016168 mRNA upstream 1439661 9791314 ~ 9797697 (+) True AMCG00016168
AMCG00016163 mRNA upstream 1495940 9724589 ~ 9741418 (+) True AMCG00016163
AMCG00016181 mRNA downstream 10343 11251147 ~ 11252118 (+) True AMCG00016181
AMCG00016182 mRNA downstream 128558 11369362 ~ 11370140 (+) True AMCG00016182
AMCG00016180 mRNA downstream 149005 11389809 ~ 11390312 (+) True AMCG00016180
AMCG00016184 mRNA downstream 274952 11515756 ~ 11530359 (+) True AMCG00016184
AMCG00016186 mRNA downstream 386889 11627693 ~ 11643410 (+) True AMCG00016186
TU14432 other upstream 1638202 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 1645709 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2011113 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2137322 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 2165336 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 628021 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 1537420 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 2381075 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 2390481 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 2394638 13635442 ~ 13637001 (+) True G12351

Expression Profile