RNA id: TU14583


Basic Information

Item Value
RNA id TU14583
length 580
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G11801
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11340870 ~ 11341449 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagggtcGCCCAGCAAAACTGGatcaggcaaggagggcattaatcagagaggcaacaaagagaccaaagataaccctgaaggagctgcaaagctccacagcggagattggagtatccgtccataggaccactttaaacCATAGAGTCCACAGagcttaaagaaacaaataaacaaacacgtttactgttcgccaaaaggcatgtgggagactccccaaacatatggaagaaggtactctggtcagataagactaaaattttattttttggccatcaaggaaaatgctatgtctggcacaaacctaacacctctcatcaccccaagaacaccatccacCATcaccacagtgaagcatggcaCTGACAGCATcctgctgtggggatgttttcctcagcagggactgggaaactggtcagaattgaaggaatgatggatggcgctaaatacagggaaattcttgagggaaacctgtttcagtcttccagagatttgagactgggacggaggttcaccttccagcaggacaatgaccctaagcgtactgctaaagcaacacttgagTGGTTTATCTGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14537 lncRNA downstream 362476 10978183 ~ 10978394 (-) True G11759
TU14532 lncRNA downstream 397096 10943526 ~ 10943774 (-) True G11754
TU14529 lncRNA downstream 432794 10907853 ~ 10908076 (-) True G11751
TU14516 lncRNA downstream 495468 10845186 ~ 10845402 (-) True G11741
TU14508 lncRNA downstream 625343 10715319 ~ 10715527 (-) True G11734
TU14587 lncRNA upstream 46282 11387731 ~ 11388125 (-) True G11805
TU14589 lncRNA upstream 58758 11400207 ~ 11400418 (-) True G11807
TU14598 lncRNA upstream 142113 11483562 ~ 11483793 (-) True G11814
TU14652 lncRNA upstream 360142 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA upstream 369835 11711284 ~ 11717417 (-) True G11858
AMCG00016179 mRNA downstream 103354 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016177 mRNA downstream 214132 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016178 mRNA downstream 306607 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016176 mRNA downstream 493335 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016173 mRNA downstream 1222651 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016185 mRNA upstream 102906 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016183 mRNA upstream 130277 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016189 mRNA upstream 242365 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016188 mRNA upstream 263368 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016187 mRNA upstream 306282 11647731 ~ 11662835 (-) True AMCG00016187
TU14520 other downstream 493059 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 493059 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3146438 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7420446 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 7801677 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 981712 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1520650 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1520650 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1528391 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 2213136 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile