RNA id: TU14587


Basic Information

Item Value
RNA id TU14587
length 395
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G11805
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11387731 ~ 11388125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttggtgactatggtcccagctgccttgagatcattaacaagatcctcccatgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacaaggtgagatcttgcatggagccccagaccgatggagactgacagttattttgtgtttcttccatttgtgaataatcgcaccaacttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatgtgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattaggagcactccctttaagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14583 lncRNA downstream 46282 11340870 ~ 11341449 (-) True G11801
TU14537 lncRNA downstream 409337 10978183 ~ 10978394 (-) True G11759
TU14532 lncRNA downstream 443957 10943526 ~ 10943774 (-) True G11754
TU14529 lncRNA downstream 479655 10907853 ~ 10908076 (-) True G11751
TU14516 lncRNA downstream 542329 10845186 ~ 10845402 (-) True G11741
TU14589 lncRNA upstream 12082 11400207 ~ 11400418 (-) True G11807
TU14598 lncRNA upstream 95437 11483562 ~ 11483793 (-) True G11814
TU14652 lncRNA upstream 313466 11701591 ~ 11717417 (-) False G11858
TU14651 lncRNA upstream 323159 11711284 ~ 11717417 (-) True G11858
TU14659 lncRNA upstream 350220 11738345 ~ 11738599 (-) True G11865
AMCG00016179 mRNA downstream 150215 11224456 ~ 11237516 (-) True AMCG00016179
AMCG00016177 mRNA downstream 260993 11034266 ~ 11126738 (-) True AMCG00016177
AMCG00016178 mRNA downstream 353468 11001740 ~ 11034263 (-) True AMCG00016178
AMCG00016176 mRNA downstream 540196 10834412 ~ 10847535 (-) False AMCG00016176
AMCG00016173 mRNA downstream 1269512 10075455 ~ 10118219 (-) True AMCG00016173
AMCG00016185 mRNA upstream 56230 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016183 mRNA upstream 83601 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016189 mRNA upstream 195689 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016188 mRNA upstream 216692 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016187 mRNA upstream 259606 11647731 ~ 11662835 (-) True AMCG00016187
TU14520 other downstream 539920 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 539920 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3193299 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7467307 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 7848538 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 935036 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1473974 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1473974 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1481715 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 2166460 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile