RNA id: TU14651


Basic Information

Item Value
RNA id TU14651
length 3535
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G11858
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11701591 ~ 11717417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCattcaaaatagtttattgCTTTCATGCAGGAGTGCCGTAAAGTTCTGGAGACCACTAGTCCAGACTCTCACAGAAGATgcaaaacttgtttttgttttctgtacaaaGATATACTGGTTCTCATAAACAGAAGctgaaaaagtgttttaatttatttttagtggcGGGGGGCTGACAAGTAATCTTCCCAAAGGGTTCCTACCCCCGCCTCTCACAAGCTCAtacagctgctgcagcaggttGCATGCATCGACGAACAGAGCGGCACAGTTTACGgcggacacagacagacactgccTGACAGCATTGTCAATTTACTGGGTTTTTACGTGCAAAAGTGGTACAAATGACATTTTCTTGTATAAATTGCCACCATAAAGTTTTTTAACAGtttgtaaaaacaaagacattaaaaatcttttaatcttttttttttttttttttttaataaagttttcagccttatttattttgctttattaccCTGGAGAAGTGCTCATATGTGAGCAGATTTAGCAGAATTTGGTACTAGCAGATTCCGGGAATTCTTTAATAGTGTCATTCAGCCCTTTACAACATTGTTCCCCTAATTTTCTTGACTATACTTTTGAACAGTTTCAGTTACTGCCATCTCTTCCACGGACGAACACTGCTCGAGGATCTCTCCCCAGTGTCTCCCCCCATTTTGAATTCTCCGTAATTAACGTACATGAAAGGGGAGTAGAGGGACGTTAACAAAAGTTGCAATGTTTCGTGCTGATTGGAAGCGTAAAAAGGACAGGAACCAAGCGAACAGCTAACACCATTAATATTTCAATCAAACAAAGGTGAAGACATGCAAACAGAtttaagaacaacaaaataaaaatcatgaagTAGGATTTCCCTTAAAAGACTGGCACCGTATCCTGCAGAATAAATAGCGCTTTACATTCGCAACCCAGCTGAACCcctactttttttaattattatttttaattacaaaaaaatacattgaaacaacaaaaaacaaatcgtATATAATTAAGTTGCTGGTTGCTCCCACAGTTTCTCGGAAGAAGAAGTGCTTACAAATCCTTGTAAGAGACACCTgtccaaactgtcagaaaccgGCAAATAGATCCTCGAAAGGAAAGAGGGaaatggggaaagaaaaaaagaaattaaaaaaataaataaaaatggatgcatctcttcctcttccaatggaaaaactaaaaacaaaaaaactaaaataaaaaccctcTACCATTTTGACACGTAACAGCACAACACGTTACTTCTTCTGCTTCTTGAAGATCTTGAAGGTGTGTTTTTTGCGGTTGACGGTGGAGTCGGTGTCTTCGCCTGTGGAGCCACTGTCTTCCTCTAGGGGGCTCTTCTTGGTGGAGAGCTGAGGGATGCGGCTCCCTTTCCCCCCCGCGGCTCCAGCCTTGGCATCGGCGGTGGGGGAGGGCGTGTCAGGGTCGGTGGAGGAGGGGCTGAGGGAGTGGGACGACTCGGACTGCGAGAGCCCCACCAGCGCGCTGTTGATCTCACCCAGGCTGGCCGACTTCTCCATGCCGTACACCTTCTTGATCGCCAGGGGGCTATCCCCCGTGGCCTCCGTCCACAGCCCGCCCTCCTGGACCCGGTTCCCGCCGTTGGGGGTGTGGCTATGCAGGGAGGCGGTGTCCTCTCCCCGGGCCGCACCCCCGTGGAGGAGGGAGGTGGGCTTCAGGGGGTGGCCCTTGGAGCCATAGGACGCCGACAGCCGCTGTTGCTCGCTGGGCTGGGACAGAGAGGAGTCGGAGTCCGAGCGGTTAAGTTCCCTGGTGGAGAGAAACCGAGAGAACGCGTCACTGTGGCTGATCGCTTAGGAGCATATCAACATGTATAAACAGCTGGTGGGTCTTTTATGCATGTTTACCATTGTAAAATTTACAATAAGATCTGCACACTTTTAACCATGGTTTTACACTGGTTTCCTATTGGTTGAATATACTATCAGTAGGCTTTACTGCACTGAACCATGGGAATACAATGATACATATTTCTAAGGCATGTTTACTATGAGCAACCATGGTTTATTCGTGGCAGAatgcagtaaagcacagtgaatgCATGATTAAGCCACAGGAAACCACTGAAGTTCTTTCTGAAAAACTGAGGTAAATGTAAGGTATGTGCCTACACAATACCCGATTAATGATACATTAACAATCAACAACGATACAAGTTGTGGTGATGTGGGGTGTTGTACTGGTAACGGACGGTTACCGGGTGCACGTTTAATTGTTCGTGACTGTTCTGAAGAACCCAAAAAATGCCTGTGAGAAATTGTAAGCACATGACCGGAAAAACAGTGGGTAGATGGTGTGAGCTCCTTTCCTGCTGATAAAGTAGCTTGTTCTGCATTCAACAGCACAAGACgcaaataaaaaagcaccaGTCATTCTACAGAGCCATGTCAAAGACATGTTATTTAGAAATCATGGGCAGACATGTAAGCATACTGGACTATCCTCAGCATCTCTTCAATGTCTATTATGCGTTAGTAATTTGGCACTGTAAATGGCTATGCTAATACTATGAAACTTCTGGGTCTCCAGCAGTTTCCATCGTGCGGATTTCCTTCCACGCTATATTTTGAGGACTTAGCGATGCAAAACTATTGTTGAGATTTCAGTGCTGTACAGAGGCATTTAAACTGGATCTTAAACTGTGCACTTACCTGACATGACTGACTTTATAAACCTAGAGGTACATCAAGGAATTGTGTTTAAGTGTTTGACTTCCAATAGGGCGTATCACATTTAAATGTGGATTGTGCTTAAAGCGTCAATGTACTTCAATGCACATCCACAGCACATTGAGCAAGATTGTCTGTTTTTCCTGGTATGCTTTTCAGGAAGTACTTTATGAAACTCTAGAGCAAAAACAGTCTCATGATCACTGTAAACAAAAGATACAACAATGCTTTATAGTAGTAGTGCTCAGTGAATCTAACAGCAAGAACACTGAGGCGAATGTTAATGGTGCAGCTGCCAAACGCTATTTCAGGCTTCATTCTCAGCATGCTTTTGTTCTGGGCTCAGCAGTCTGATATTTGTCACTCCACTTTAGTTAGTACTTCAGGCAGTCAAGCACAGGACTGGGGCAAAAAAGAAGGGGGGGTTGTAGGCTATGAGAAAGAGGGAAGTGCCCGTTACAAAACATTCTATGCTGTGACTACGAGcagaagaacagaaaaacaaaggaaatccagaaagagggaaagaaacaCCCTACTATTTCTGGAATATGCTCAAACTTGGCAAAAAGGGTATAAGAATACAagatctggaaaaacaaaagagcaaaGTAACGACTGATTCCAAGTTAACTCGGTGAAAGAATCCGAGGGTGATCTGGGTTTACTCAACCCAAACAGAGCAGTGCTCCATCACAGGGTCGACAGGCATGGGTTCCTGCAGGGGTGCCCAACCCTGGTCCTTGAGGGCCCCAATCCACTTgatcttataggtcaccctcaatcaccaatttctaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14598 lncRNA downstream 227491 11483562 ~ 11483793 (-) True G11814
TU14589 lncRNA downstream 310866 11400207 ~ 11400418 (-) True G11807
TU14587 lncRNA downstream 323159 11387731 ~ 11388125 (-) True G11805
TU14583 lncRNA downstream 369835 11340870 ~ 11341449 (-) True G11801
TU14537 lncRNA downstream 732890 10978183 ~ 10978394 (-) True G11759
TU14659 lncRNA upstream 20928 11738345 ~ 11738599 (-) True G11865
TU14679 lncRNA upstream 48735 11766152 ~ 11766577 (-) False AMCG00016194
TU14772 lncRNA upstream 115011 11832428 ~ 11947322 (-) False AMCG00016203
TU14773 lncRNA upstream 173571 11890988 ~ 11907969 (-) False AMCG00016203
TU14816 lncRNA upstream 521368 12238785 ~ 12239014 (-) True G11996
AMCG00016187 mRNA downstream 48449 11647731 ~ 11662835 (-) True AMCG00016187
AMCG00016188 mRNA downstream 88225 11604817 ~ 11623059 (-) True AMCG00016188
AMCG00016189 mRNA downstream 120187 11583814 ~ 11591097 (-) True AMCG00016189
AMCG00016183 mRNA downstream 235492 11471726 ~ 11475792 (-) True AMCG00016183
AMCG00016185 mRNA downstream 265974 11444355 ~ 11445310 (-) True AMCG00016185
AMCG00016195 mRNA upstream 1998 11719415 ~ 11729797 (-) True AMCG00016195
AMCG00016194 mRNA upstream 49025 11766442 ~ 11781547 (-) True AMCG00016194
AMCG00016201 mRNA upstream 100671 11818088 ~ 11836421 (-) True AMCG00016201
AMCG00016199 mRNA upstream 130867 11848284 ~ 11866869 (-) True AMCG00016199
AMCG00016200 mRNA upstream 151370 11868787 ~ 11886193 (-) True AMCG00016200
TU14520 other downstream 863473 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other downstream 863473 10846931 ~ 10847811 (-) False AMCG00016176
TU14024 other downstream 3516852 8191546 ~ 8194432 (-) False G11326
TU13237 other downstream 7790860 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 8172091 3529252 ~ 3539193 (-) False AMCG00016046
TU14856 other upstream 605744 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 1144682 12862099 ~ 12870560 (-) False AMCG00016226
TU15029 other upstream 1144682 12862099 ~ 12862870 (-) False AMCG00016226
TU15027 other upstream 1152423 12869840 ~ 12870560 (-) False AMCG00016226
TU15220 other upstream 1837168 13554585 ~ 13559184 (-) False AMCG00016246

Expression Profile