RNA id: TU14713


Basic Information

Item Value
RNA id TU14713
length 3314
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G11914
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11848285 ~ 11851621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcagttttattttattttttatttttatcatctcGGGTAAAGTGGACATGTTCTGTCAAATCAGTATTGTTGCCATGACAAAgctctttttattttggcaaatcacaattaaaacagacatCTCTGCTCCACAGTTACAGATTATAAATGCTGTGTGATGGTGACAAACcatgaaaatgaacaaaccCATTATAATACACCCTCTCCCAGCCCCCAAATAAACCCTATACATCTCACTTCCCGAGGAGCTGCTATAACAAAATAAgtagggtatatatatatatatatattttcatatttttcctgAGCCTAGGGATTGGTTGAAGACATCTGAATCCCAGATCGGAACACTTCTCAACGCATCGCTTGCAATAACTTCAAACAAGCACGAAGGCTttcaaactgaataaaatgatTGGTCGATGTGCATGAGGCACTCTGCTGTACCTGTACAATGTTACTATAACACTGATCTCCTGTTACTTCTTTGAAGTTTAAGACAGCTGCGCAGTACAGGAACGATGTCCGCAGCACGGGTCTCAGACATCCACTAAATCCCACTGCCCTGGACCGCACGCCCCGATCTGTACCGGGAATGATACAGAGACGTGGGGCAAAATAATGCACAGGTCCTTGTCTTGGTGTGAGGACAGTGAGAGTCCAAACAGACTGCAGACTGATGTTACAACATCTAACATCACTTTTAattcataatcatcatcagcaCCTTTCTCagtcatttttttccttctgcaaaacaaaagtagTTCTTATGGTGACTAAGACACATTTAATCTACTCACAATGTAGAACCGGATGCACTGGTCATGAGAACACGGAAGACACATATGTAAAACAACTGTCACTAAGCAGTTTCTATTAGTTGTACATGCATTTTATGATGAACTTGAAGGGCTAGTGTGTGGATGCGTTACTGTTCCCCGACGCCATGGGAAAAGTACAGGACAACCCCACCATTCGGAGAGATCATGTGCGGATGTAATTTACCCTATTAACTGCAATTCAGTGGGAGACAAAAGGGACAATGCATGTTAAAACAAATGGCAGCAGCATGCTTGAATAACACCGAAGTAAtgccaaacacattttatacagGTTAAAATATGATACAGGGGATAGATTATCATTTGGTTGTTTATATACAGAAATTACTACAATTTCCATTGATGCCGATCAAGCAATAACACACCGTTTTATCCCACCCTTCCGCCTGGAAGaattcatattatattaaaaccaaaaattaataaattaacaaaaaaagccaaacaaaacaatcaaatcactCAGCTTCAGTCAGTTATGAAAATTTTAAAATCGGGGAGTTTTTGGTTGTGATGTGTGATGATAACCGCAGGTAAAGGTACTAAGGTGGAAAATACATGATTATTATCGTTAATAATAAGGTATTAATCCAACTCTTGATTGGAGAATTTATGTCTGAACCACTGCtaagaataatatattatatactaaGCCAATCAGACAGCTGTTTTAGATATTAATACTAGCAGGCTTGCTGAATatagaaaaacatacaaatgcaggctgcagcaatttaaaatgtatctatcCAGAGTTTTGTTGAGGAGACTTCAAAATACAAGCTTTATATGAAGAGCACATCAAGTCATTCATAGTTAACTTTGTACCATAGTTTTTAGAAGATCAGACCACAACTGAATGCAAACTTCATAGCTTCCTCAAAACTAAACTGCACGCactatttcaaatgcaattcaCAAACAACTGTGCAGCAATTCAGTAGATTTGATAGGGATGAACTCAGAGGGTCAATCACACTGTACTCTTTATGGGCCAGGAGGAAAGGATAATGATGTCATCAACCTGTAGGGACACCTCTTCCTCTGGGAAGCCAAGACCTTGTGCATCATGAACAGCGACCTGTAATAACCCTGCTTTACCAGCTCGGTCCTCAAGCTTCCTCCTCAATCTGAACCCAACATACTGGGTGAATCTCAAAAACTAAACCTCCCTTTCATTACAGTTTCAAAAGGGTTTATTAAAGCATTTTGCAgctcctttaaaaaataaaaatgaaaataaaatagtcaaGTTACACGTCCCCTACAGATACCACCCTTGAGATAAGGTGCATGATAACAGTGGCAGTGGAAGACTTATTCTCTGCTCAAAAGTCTTCATCCGATTCCTCCATGTAAATTCCCTTCCTCTCAGCTCAAGTAAGATGCATCGATTGCTCAGATGTTTTGCAGTGAACACCAATGGAAGAGACTGGAGTTCCCACCCCTACAATTATAGCAAGCAGCCGTCTGCGAGGCGTTTTCTTGTGCAATCATCAAATAATAGCAATATTCTCTTTAACATGAAGACTCTAAAACATCccacaaatgaacaaataaaagcagTGCAAGAAAAATGTCCAACTGCTGTAGCATTACAGCAATTCTATAAATAcccatatacatacatgtgtatattataaatattcttTCAAATTGTCAAAACATAAGgtgcttttcattgttttacagcAGGAGAACTTTCCATGCCCCCCAAAGACCCTCATATTTACCAAATCGACCACAGTGAGCTATAATATTCTACAGTGAAAAGCCTTCTCAAATCCAAGGAATATCATTCTTCAAAAATCATCCAACGAAAATCATTCATACCTCCAGCAATCTgagtcgtgtgtgtgtgcgcttcaGAAAGGCAATCAAACACTTCAGCTAGGACTGAACAAATACCAAAAGATTTCTGCACACGAGAtttggaataaaaaacagaaaacgcACATATCTGTAATACTACAAAAAAGGATAATTCTCTAATCTTTTGCAAAAGCACAAgatcacaacaaaacaaagtgccGTTGCACAATTTTTCCCAACTGACAAGCTACTCTGTActtgtctgtattttttttttttctctcacacaaGTAGGGGAAGAGTCCATTTCAAATACTAAACATGTTGACACCAACATGCTGACGGTCTCTCGCCGTGTGGAGGACTACTTGAAAATGGAAACGTCGACTATTACAAGACACTGGATGCTGATATTAATAGAACCGTCATCACTGTCGTTTCGTATTTGCATGGGACCGGAGTCGGGCCGGCGGTCTCTACGGCGAGAGGGGATGCAGGTGGCGTTGTGGCGGGGGAGTTATCGGTTGGCTTTGTACTTGGAGGCATCTCGAGGCTCACTGCTCGGGTTGCTCCAGTCGTCGGCCTCGGGGCTGGTCTGGTAATGCCGCCACGCCGACTTGTTGAACACAGGGAGGCGCTCAAAGGATTCGCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14703 lncRNA upstream 29220 11817004 ~ 11819065 (+) True G11905
TU14644 lncRNA upstream 118059 11729600 ~ 11730226 (+) True G11851
TU14643 lncRNA upstream 120862 11726942 ~ 11727423 (+) True G11850
TU14642 lncRNA upstream 124684 11723197 ~ 11723601 (+) True G11849
TU14641 lncRNA upstream 125727 11722068 ~ 11722558 (+) True G11848
TU14762 lncRNA downstream 148847 12000468 ~ 12005903 (+) False AMCG00016202
TU14758 lncRNA downstream 176678 12028299 ~ 12029121 (+) False G11953
TU14759 lncRNA downstream 176678 12028299 ~ 12029121 (+) True G11953
TU14808 lncRNA downstream 354727 12206348 ~ 12207474 (+) True G11988
TU14829 lncRNA downstream 410430 12262051 ~ 12265709 (+) True G12009
AMCG00016197 mRNA upstream 421 11837672 ~ 11847864 (+) True AMCG00016197
AMCG00016196 mRNA upstream 47489 11796688 ~ 11800796 (+) True AMCG00016196
AMCG00016198 mRNA upstream 56653 11782180 ~ 11791632 (+) True AMCG00016198
AMCG00016191 mRNA upstream 83638 11751518 ~ 11764647 (+) True AMCG00016191
AMCG00016192 mRNA upstream 98914 11741483 ~ 11749371 (+) True AMCG00016192
AMCG00016202 mRNA downstream 141351 11992972 ~ 12005952 (+) True AMCG00016202
AMCG00016205 mRNA downstream 205079 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016206 mRNA downstream 321447 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016207 mRNA downstream 390022 12241643 ~ 12261142 (+) True AMCG00016207
AMCG00016215 mRNA downstream 534357 12385978 ~ 12397053 (+) True AMCG00016215
TU14432 other upstream 2249129 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2256636 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2622040 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2748249 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 2776263 9068281 ~ 9072022 (+) False AMCG00016136
TU14724 other downstream 17204 11868825 ~ 11871735 (+) True G11921
TU14996 other downstream 926603 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1770258 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1779664 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1783821 13635442 ~ 13637001 (+) True G12351

Expression Profile