RNA id: TU14724


Basic Information

Item Value
RNA id TU14724
length 2371
RNA type TUCP
GC content 0.41
exon number 2
gene id G11921
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11868825 ~ 11871735 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttattacctcagcagttgtgtagttttatcAACATCACTCTCTATTTTACGagtccattaaaaaaatgagaaaatcaACATCTTTAGCAAAACAAGGGATGCAAATGTGTTATCTGTGTTTAACTCGGTAAGATCTATATCACTTTATACATCCTACTGTTtacaaacatattattatttatatataaaaaaaacaaaacctgaataggtgttttacatttattaaaaaaggtCCTCCACATGTAGTACAAATAAGGTCAGTGCCAATTGTTCTGTCCCAACGCTTCTGTCTTTATTGGCTCAAAAAGGTATGTTGACATTATGTTATCAAATAAACGCACTAAACAAGCAAGaatgtttggttttaaaaatatatttttactagTTCCATTTTTTCTGTTAGTACACACAAGTCATAATTGCACCTGTACACCAAACTGGcattataaaaatactttatatcTGTGTATCACTTTTATATAGACTACTACTCTTGTACTCTCTACCCAGCAACTTccaaaaatgcacacacacgcacacaccttCCATTCCAACATATGAAAAGAGTTTATATTTgaggttttaaaaacagacattatgTCCATTATAATAGAGAACTGTATTTTGTTCTCCAATACAATGTTACTGAGATTAACCCAGTGCCAGCATACGCTAGAAACCtgacaaaattacatttaacaatttgACCAAGTATAATTTCTTGGATTCATTGCAGCACAGTGAACTCTATTAATGAGTAGATACAATATTTGATACAGCCTTAATAACTAAAtggtgttttataaatatattttaaaatgtccataTCCAAATATGGGAAATGGTTTGATGCCAGCATAGATAGGAGCATAGGAGATAGGAAAAAACTGAACATGataaacataaacaagaaaaaaaaatgcaatcttcTATGTTGTATCGGAATATAGGAGAAGAACGTATTctacataaaataacagaaaacccTGTATTGTATTCGCTTAATACAGCCTATATaggttaaatgtttttgtagtcAGCCATGGCAAATTCCTAAAACATGTTCACTTCCTGGGCTTTTGTACTTAacgtattaaaaaataatacacacacaacttcaTAACATCAACTCACAGGCAGAATACAGCCAGTCAGAAAAAGTGAACTTATTGAGGTTCTTTTCTGCAGATGTTGCTCGTCTCCAACTCTGTGGCAGACTGAACAGGTCCTAACACCAAACGCAGGAACAGTGTAACACCAGTGTGCGCGCAGTCTCCTCTATGGTGCGGCTCCTTGCAGAGGCCCACAGTTAAGCCGTCTGCACGCCGTCCTCGCCACACTCGGACTGCAGCAGGATCTTGGCATTGCCCTCGTTGTCCTCGGCGTGCTTGTCCAAGTCGTCCAGGGGCTTGTACCGTCTCCTGTACAGCATCCTGGTGACCAGCGTGACGATGAACATCTCCATAATTAACAGCTGCTGGTTCATGACTGAGGAAAGAGCAGACCACAGTCACTCCCTCAGACTTTCACACCACTTtaaggagtcaccctcgatcctgtgctctcctacacccagcacatcaccacgctgacatgcagatttttcctgagcaacatatgccggatccgtcccttcctcaccgactgcTCGATTCAGCTGcccgtccagtcactggtcctcttccgcctggactactgcaactccctcctgtccaacctgcctgcaactactacccgccgctccagctcatccagaactctgcggctcgtctggtattctctctgccacggttcgcacacgctactccactgctccgctccctccactggctcccgataccggcacgcattcagttcaagacattgaccctcacctaccgctgtctcaaccacactgcaccaagctaccttcagacactcgtctctccatacatcccctccagaccactgcgctcctccagagccagaagactaactctacctcctctccactctccagagccgctccttctcatcccaggcccctaagtggtggaaagcccttcccactgaagtcaaaacagcagagtccttgacctccttctggcgcttactcaagacacatgttttcagacagtacttgtaatttagtctttcattatcctgtaagattgcacttatacaatgttttgtcatactcttgcctttgcattaatagcacttgtattgtttattttgatttcccctactCTCCCTCTGccttagttcttaactttgacttaacatcatgtctgcacttatcagctctTACAGTCTAGAATACACTTGTAAAAaggtattatgcctgaactgcactgtattattgtattgtattgtattagtgcactttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14713 lncRNA upstream 17204 11848285 ~ 11851621 (+) True G11914
TU14714 lncRNA upstream 17204 11848285 ~ 11851621 (+) False G11914
TU14703 lncRNA upstream 49760 11817004 ~ 11819065 (+) True G11905
TU14644 lncRNA upstream 138599 11729600 ~ 11730226 (+) True G11851
TU14643 lncRNA upstream 141402 11726942 ~ 11727423 (+) True G11850
TU14762 lncRNA downstream 128733 12000468 ~ 12005903 (+) False AMCG00016202
TU14758 lncRNA downstream 156564 12028299 ~ 12029121 (+) False G11953
TU14759 lncRNA downstream 156564 12028299 ~ 12029121 (+) True G11953
TU14808 lncRNA downstream 334613 12206348 ~ 12207474 (+) True G11988
TU14829 lncRNA downstream 390316 12262051 ~ 12265709 (+) True G12009
AMCG00016197 mRNA upstream 20961 11837672 ~ 11847864 (+) True AMCG00016197
AMCG00016196 mRNA upstream 68029 11796688 ~ 11800796 (+) True AMCG00016196
AMCG00016198 mRNA upstream 77193 11782180 ~ 11791632 (+) True AMCG00016198
AMCG00016191 mRNA upstream 104178 11751518 ~ 11764647 (+) True AMCG00016191
AMCG00016192 mRNA upstream 119454 11741483 ~ 11749371 (+) True AMCG00016192
AMCG00016202 mRNA downstream 121237 11992972 ~ 12005952 (+) True AMCG00016202
AMCG00016205 mRNA downstream 184965 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016206 mRNA downstream 301333 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016207 mRNA downstream 369908 12241643 ~ 12261142 (+) True AMCG00016207
AMCG00016215 mRNA downstream 514243 12385978 ~ 12397053 (+) True AMCG00016215
TU14432 other upstream 2269669 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2277176 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 2642580 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 2768789 9099420 ~ 9100036 (+) True G11509
TU14219 other upstream 2796803 9068281 ~ 9072022 (+) False AMCG00016136
TU14996 other downstream 906489 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1750144 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1759550 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1763707 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 2566036 14437771 ~ 14438606 (+) True G12587

Expression Profile