RNA id: TU14829


Basic Information

Item Value
RNA id TU14829
length 2586
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G12009
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12262051 ~ 12265709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttgttttaaaggttttattattGGGTATGGCAGTTTTAATAACCTTGAATCTTACAATATCCAAATATGtcaatataattattgtaaaaagtagattttacatttgtgtcatAGTTATGCATTGTTTACACCTGATAGACACTGTCTTAACCATTCTATATGGTATAACTAACACCGGTCTTTAGCTTTTGTCTGTGTAAATCATCCTGAAAGACTTAAATCCCGTCTGCAGAAGGCAATGACAAATGCGTGTGCAAACCAAACACAACTGTCAGAGGTGAGCGAGCACAACATAATGATTTTAAAGCATCTGGAGTTTCTGTCACTTTAAGAAATACTCTGTTTACAATGATCACACTCAAACAAAGCTGTCACTTCCCAAgacaaatgattaaaaaaaaaaaaaaagctcaacgGTATTGTCAAAGCACTtgttcagcacacacacaacacatatagCGGAATCTCAATCATCAGCCATACTAACAGTCTTTCAAATTCACAGTTTTTCGCCCCTTCAACACTTTGATTCTGTATGACACTTTGGATCTATTGTTCTTCTCctaatacacttaaaaaaaaatcttatttaaattgcaaactcttcaattatgtttttttgtgtagcACACATTTGCCACCACCAGATACACACTTTTCACTAAAAGTATTTAGACAAAGGGCAAGTGAAAGAGCCAGTTGCAATGTATTTAGTCCAGTAAATGGCCAAACTTATCCTTCATGACTGCAGATCCTTTTCATAGATGGCCAGAGGAATGTGCTGCAGGAGGATTCACAGCTGTGGTTTCTGACCGCTTTTCTGTCCTGCTTCATCCCAGACATGGTCtgtgggattgaggtcaggactctgggCCAGATATCAAATATACTCAACGCTATTCCCCCAAAGCACTGCAATGCAGTCATGGGCTTTGCTGACAGGCCGCAAACATCCATAGATCCGAACAGGCTACATGACACAAAATGTCCCCAAACTGCTCCATCTTTTGACTTCACAGCAGTCTGATTTCCGAGTCTTATCGATCCATCGCTCCTGTATCATTAGTGCCTTTAAAGTCCTCTATCCCATATGAAAATATACCATCACTGTCGCTGACACACAGCCATTCACGATTGAGAAgcttataattatattaaaaaaaagtaaaaagtaaatacaatgtgTTATAAAAAGGTTTGTCATCAATGCTGTAGGACTCAGTGGAAGGCAGAGAGAATGTCAATTGGTTAAACAGCACATACACCTTTTAATAATCACCAGGTGAACTTGTTGGAACAGATGACATTACAGGTAATACTTGATTTTGTGGTCGTAAGCGCAGATTAGCAAAAGTCACTGAAAGGCCAAAACTGAGTTAGTTCAGTGCTTCAGTGAgtcacaggtttttttttttttttttaaaccctgcagTCAAACCTTAGACAAAACAGAGACACCATATTTTCTTTCCAAGTCAAAATACTGGCACAATGACAGAGCCCAGATTTACAGTGTTCCGTTTTTCGAGACTTGAACTGAAACATATGTATGCACTGAAATGAGTATTTAGACAAAGGAGGTCAGACCTGCTGTTCCCCTTCCCTCTAAGTGAAAGACACAGGGGCACAGTATTGAGATCCTGCCAGTTCTTCGCCTGCTCCACCTCCGTTACATTCCAGCGTTAGATTTGATCATATATTCTGATATGTCATAGACTCGCACCTAGAGGAATCCTAGAGAGGCCCTTAGAACATCTCATTTATAAACGGCTCTTATATATAAAGTGACAGAAACCCCACGTTTTGTTTCAATTCTCTGCAAATGTGCAACCTGTAACTTACATCTACCAGGCCAACTCTAATTATGCTATACTACCAAATATATGAGGATGCCAAAATATTCTGGTTCTCAGTGTATTCAATAGGGAGTAGGCCCATCTTCACTGAGGTAGATAGAGGATTCCCAAGTTTACACAGCAGTCATTAATATCTCCAAATTACCGGCTCAAATAAACTGGTTAACAAGAACAGACAGATACAAGCACTAAAGTTTAAAAGCAATACCAGTGGTCCCACAGAAACcatcatttataatatttttttaccttaaGATTGATTATCCCAAAAAAAACCcactataaataatgtaaagaaataaaGTAACGGTCTGGATAAGGGTGAAACATAAATATCCAATCCCggtaatattttcattttaagcaaTTATTTTCTTGATCTTCAGTGGTTAGTGTtcatttcttctttctccttctttctcctTCCAACCAAAAACCAAACTGGGTTGTATGCAAATTGGGCAATGAGGGAAACAGCATGCCCAGATCCTTCTGCTGCATGGAACAAATGTGATGAGATCACGAACACATATCCCCTATtctgaatgaaaattaaaggTCAGTTACAGTAGGGTAGGTCATCAGTAAGTGTGATATTacctcacaaacacaaaacaatgaaacaagaaGGACCCTTCATTCGGAATCCATTATGAAGGTCTCAAAATCGGGGTTCAAATCTGAAACCAGGGCATCTACAAACTCTGCGGTGGAAGGAGTCTTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14808 lncRNA upstream 54577 12206348 ~ 12207474 (+) True G11988
TU14758 lncRNA upstream 232930 12028299 ~ 12029121 (+) False G11953
TU14759 lncRNA upstream 232930 12028299 ~ 12029121 (+) True G11953
TU14762 lncRNA upstream 256148 12000468 ~ 12005903 (+) False AMCG00016202
TU14713 lncRNA upstream 410430 11848285 ~ 11851621 (+) True G11914
TU14854 lncRNA downstream 57468 12323177 ~ 12328393 (+) True G12032
TU14855 lncRNA downstream 57468 12323177 ~ 12328393 (+) False G12032
TU14859 lncRNA downstream 66427 12332136 ~ 12333112 (+) True G12036
TU14865 lncRNA downstream 88966 12354675 ~ 12355369 (+) True G12042
TU14866 lncRNA downstream 109039 12374748 ~ 12375109 (+) True G12043
AMCG00016207 mRNA upstream 909 12241643 ~ 12261142 (+) True AMCG00016207
AMCG00016206 mRNA upstream 56392 12173068 ~ 12205659 (+) True AMCG00016206
AMCG00016205 mRNA upstream 152667 12056700 ~ 12109384 (+) True AMCG00016205
AMCG00016202 mRNA upstream 256099 11992972 ~ 12005952 (+) True AMCG00016202
AMCG00016197 mRNA upstream 414187 11837672 ~ 11847864 (+) True AMCG00016197
AMCG00016215 mRNA downstream 120269 12385978 ~ 12397053 (+) True AMCG00016215
AMCG00016214 mRNA downstream 135120 12400829 ~ 12407292 (+) True AMCG00016214
AMCG00016213 mRNA downstream 176223 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016218 mRNA downstream 400474 12666183 ~ 12679044 (+) True AMCG00016218
AMCG00016220 mRNA downstream 416563 12682272 ~ 12691799 (+) True AMCG00016220
TU14724 other upstream 390316 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 2662895 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 2670402 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3035806 9223412 ~ 9226245 (+) True G11545
TU14242 other upstream 3162015 9099420 ~ 9100036 (+) True G11509
TU14996 other downstream 512515 12778224 ~ 12781864 (+) False AMCG00016221
TU15233 other downstream 1356170 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 1365576 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 1369733 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 2172062 14437771 ~ 14438606 (+) True G12587

Expression Profile