RNA id: TU15039


Basic Information

Item Value
RNA id TU15039
length 223
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G12183
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12903352 ~ 12903574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaacaggtgctaatgatcatcaattcaatatgtaggttgaaacacaatcattaactgaaacagaaacagctgtgtaggaggaataaaactgggtgaggaacagccaaactcagctaacaaggtgaggtcgctgaagacagtttactgtcaaaagtcatacaccatggcaagactgagcacagcaacaagacacaaggtagttctactgcatcagcaagtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14906 lncRNA upstream 443069 12435136 ~ 12460283 (+) False AMCG00016213
TU14866 lncRNA upstream 528243 12374748 ~ 12375109 (+) True G12043
TU14865 lncRNA upstream 547983 12354675 ~ 12355369 (+) True G12042
TU14859 lncRNA upstream 570240 12332136 ~ 12333112 (+) True G12036
TU14854 lncRNA upstream 574959 12323177 ~ 12328393 (+) True G12032
TU15068 lncRNA downstream 74704 12978278 ~ 12979516 (+) True G12209
TU15082 lncRNA downstream 138668 13042242 ~ 13100583 (+) True G12214
TU15087 lncRNA downstream 161645 13065219 ~ 13065938 (+) True G12217
TU15090 lncRNA downstream 167997 13071571 ~ 13073752 (+) True G12220
TU15077 lncRNA downstream 194412 13097986 ~ 13100583 (+) False G12214
AMCG00016229 mRNA upstream 12581 12885626 ~ 12890771 (+) True AMCG00016229
AMCG00016221 mRNA upstream 116453 12778353 ~ 12786899 (+) True AMCG00016221
AMCG00016220 mRNA upstream 211553 12682272 ~ 12691799 (+) True AMCG00016220
AMCG00016218 mRNA upstream 224308 12666183 ~ 12679044 (+) True AMCG00016218
AMCG00016213 mRNA upstream 442087 12441932 ~ 12461265 (+) True AMCG00016213
AMCG00016230 mRNA downstream 56474 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016237 mRNA downstream 117409 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016231 mRNA downstream 133608 13037182 ~ 13063508 (+) True AMCG00016231
AMCG00016240 mRNA downstream 281460 13185034 ~ 13188393 (+) True AMCG00016240
AMCG00016239 mRNA downstream 308484 13212058 ~ 13247016 (+) True AMCG00016239
TU14996 other upstream 121488 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1031617 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3304196 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3311703 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3677107 9223412 ~ 9226245 (+) True G11545
TU15233 other downstream 718305 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 727711 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 731868 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1534197 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3580781 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile