RNA id: TU15082


Basic Information

Item Value
RNA id TU15082
length 2502
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G12214
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13042242 ~ 13100583 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttttttttttttttttttacgCTCAGAATGCAACCATtacattcagtttttattgtgaTGGTACAAAAGAATGTGTTGGAATGCAAATAGAATGCTTAACAATTCAGAAAATACAGGGCAGAGTATCATGGAAATCTGAATGCAATGTAAAGTGCTAATCATGTAAATAAGTTGATGCAATTGAGTAGGGTCCCGCTGCTTGGCTTCGTGCTTAGCTCTTCATAAGGATACATCATTCAGCAGAATTAGATAGGTTAGCTTATTTGATCAGctaactctaaccctaacctaCTCTGCTAGATTTTGTTAAAGCATAGGGATGACATCTAGTGCCTGTTCTGTCTTTCAACatgaacattatatatatgtttagacACTTTTTACAGTAAATCTGCTCATTAACCATTTTTTGTAGACCCCGCTGTGTTCTTAAAAAGGTGTTAAAGGGTACAGTggttcataaaaaaacattgagacAACATTGTCCGTCTGTGCATTGTCTGGATGTTTTGCAGATGGCAGGAGCAAGCTTGTGCAGTTGAGCAGTGGTTACTGTATCTGTCTTGCAGCCCTGGGTGGTGGAGAGCCACACAGATTTCCACGAAAATTACATAACTACAGTTAATCAAGAAGTCACCAGCTTATCATTCATAGACCCATTTCTAAAAAGTGATTCCCCATTCAGAATAGAAGACAGAGAGGTTAACTGGTTGGACTGCCCTCCCACAGGAGAGAGGCAGAGTTCAGGGGTGGTCTTCTCAGTTGCATAGGTCAGTACTGCAGCATGTCACTGTATCGTCTGGGATGCACATTTCATCGCATGTCCGAGTAGTGTTAGTGCCTAAGGAAAAGGACAAATAGAAACATGAGGATCTGGAAAGTGAAACCTAAGATGTTTAATATGTTAtgaatgtaatatgtaatacttaaatttaaaaataaagaaatcacaaAACATAATAAGGAACAAGAAACATCTGTTGTTGTGACCTATATATTCAAATTCTGATGTAGTGGATGCAATTTGGTAACACACTCCATTTTCTGTTCTCCATCCCATCATCCCAGCAAGATTATATCAATTCTATGGGGGTGTAAAATGATCAGAACTCCGCTAATGGCTCATTTAAGATCAACAGTATTCacgtatgtgtgtatttttaaatgtttgcccTCAAGGTATGGTTTCATATCAGAACACAACTGCAGAGGTTGAAAAACAAAGATCTTATCTAATTTCCTTTGAGAACGTCTCTTCTGGTAACTAGTTGCTGTCTGAAATATACCTCGTCAGCTGTTTTTAACTTTCAGTTGTATCAATCCCACTGCCTGCTTTGACCCCCTGCTTTTCATTTATACTGAAGGGTGTActgttgtgtattattataaaagaaGCTCAACATGGACTAATGTTCTCACAAGCCTCAAGCCTTTATTCTTTTAGGGAGTAAACAGCTTTAAGCTTTTAAGCTTTGCTTACCTGAGACCACCTTCTTGCAGAACTTGCTGGTGTCTGGACAAATAGTTGCAGCCATACAGTTAGGATCATCCCTACATGTGTTACACTTCAGTGCCACCACTGTGAATCAAGACATTGAGTCAGTCCTTTTTGGGGTTATGTACAGGCTGTTTATATTACATTGACAAAATCTCCCCTTTTCAGCAATCAGAAACTCCCTCACCAACAATTAGTAGATAagttcataaaatgtataaataaataaatacaatccttTAATCCATTATTctttcttcaaatgcattttgtaaagtCCTGTTTGTAGTATTGTTTCTATTGCACTCTTTCAGTGAAAAAGCCgggtaaaacaaaactaaatgctAAATCGAATAATTAATTGCAAATTTAACCTGGCACTTTATAtttagatacacacacactcaaactcaGAAGTAATACAGCACATTAGTGTTAAGTTTATTCCATTGTTTTGGTACCTTCCTTTCTATATTAAATGCTCTTAAGATAAGATGACGTATTTTCACTCACCTTGTGTGGTACAGAACAGCACCACCAGAAGGGTACACAGGACAATCCTCATGATTAAAGTCTGGTGTGGAGGGCTGATGATACAAGAGCAGTCAAGAAGTGGAGAATGCTTTTCCTTTACTCTGTCACGGTCAGAAATACTGTTCTTGAGGACCTCGTCACAACCATAGGCAATATTACAGCCAATCAGATGCGACCGTGATCTTTCCTGATTGGTTAATTCAGGCCTCAGGTATTTGAGCATGACGAGGTATTCCAGCAACCAACACCGGCTACTCCTTCCCAGCAGAGTTGCTATAACCTGGGATACTTTTGCCACGTCTTCATGCTCATCATGCAACAGTTGTATCATACAAGTCTCTCATGTAAGATAGcacacagaaatgcatatatttaataagcAGAACGATAACATTTTGTACAGGTACAGCCATGCATTGGTTAAACTGCATTCATGACCcaggttatgttttttttttttttgccactcTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15068 lncRNA upstream 62726 12978278 ~ 12979516 (+) True G12209
TU15039 lncRNA upstream 138668 12903352 ~ 12903574 (+) True G12183
TU14906 lncRNA upstream 581959 12435136 ~ 12460283 (+) False AMCG00016213
TU14866 lncRNA upstream 667133 12374748 ~ 12375109 (+) True G12043
TU14865 lncRNA upstream 686873 12354675 ~ 12355369 (+) True G12042
TU15144 lncRNA downstream 171001 13271584 ~ 13377103 (+) True AMCG00016241
TU15146 lncRNA downstream 251625 13352208 ~ 13389636 (+) False AMCG00016241
TU15170 lncRNA downstream 372905 13473488 ~ 13473785 (+) True G12289
TU15214 lncRNA downstream 445816 13546399 ~ 13546598 (+) True G12330
TU15215 lncRNA downstream 451011 13551594 ~ 13551858 (+) True G12331
AMCG00016237 mRNA upstream 21041 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016230 mRNA upstream 68695 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016229 mRNA upstream 151471 12885626 ~ 12890771 (+) True AMCG00016229
AMCG00016221 mRNA upstream 255343 12778353 ~ 12786899 (+) True AMCG00016221
AMCG00016220 mRNA upstream 350443 12682272 ~ 12691799 (+) True AMCG00016220
AMCG00016240 mRNA downstream 84451 13185034 ~ 13188393 (+) True AMCG00016240
AMCG00016239 mRNA downstream 111475 13212058 ~ 13247016 (+) True AMCG00016239
AMCG00016241 mRNA downstream 287379 13387962 ~ 13389617 (+) False AMCG00016241
AMCG00016242 mRNA downstream 344455 13445038 ~ 13455916 (+) True AMCG00016242
AMCG00016249 mRNA downstream 482461 13583044 ~ 13588973 (+) True AMCG00016249
TU14996 other upstream 260378 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1170507 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3443086 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3450593 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3815997 9223412 ~ 9226245 (+) True G11545
TU15233 other downstream 521296 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 530702 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 534859 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1337188 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3383772 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile