RNA id: TU15235


Basic Information

Item Value
RNA id TU15235
length 438
RNA type TUCP
GC content 0.40
exon number 2
gene id G12349
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13631285 ~ 13631797 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAACaattgttctttttcttctatAAAGCTGCACGAATCTATAATGCAGAGGCATACATTCAAGAGCCGTTTCTGCCCGCTTATGAGAATACATGTAGTCCAGAGTTTAAGGAAATGTCTGCAAAGTTCAAGAAGGAGGTAAAGAAAAACCTTCCAGAACAATTCCAGGCGTACATTAGGTCCAAAAAAATGAGGCTGGTGATCAGTGCTATTCGCAAAGGTGTGATTGTTGTCTTTGACATAGTCACAGACCTTGACATCCCCAGCAACACTTCCAGCATTCAGAAAAGTTTCCTTAAAGCTCTACATAAATCTACACTTGAAGTGGATCTAAACCAGACACATATTGGAGGTAAGACGTCCTCTGTACACGATCCAAATCTGAAGACTTTCCATTTCACAGTGCTGTTAATTCTCTGCAGCCCTTTTTTCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15215 lncRNA upstream 79427 13551594 ~ 13551858 (+) True G12331
TU15214 lncRNA upstream 84687 13546399 ~ 13546598 (+) True G12330
TU15170 lncRNA upstream 157500 13473488 ~ 13473785 (+) True G12289
TU15146 lncRNA upstream 241649 13352208 ~ 13389636 (+) False AMCG00016241
TU15144 lncRNA upstream 254182 13271584 ~ 13377103 (+) True AMCG00016241
TU15231 lncRNA downstream 6505 13638302 ~ 13639588 (+) False G12347
TU15232 lncRNA downstream 6505 13638302 ~ 13639150 (+) True G12347
TU15258 lncRNA downstream 25596 13657393 ~ 13659659 (+) True G12368
TU15299 lncRNA downstream 197937 13829734 ~ 13830887 (+) True G12406
TU15406 lncRNA downstream 550808 14182605 ~ 14184686 (+) True G12487
AMCG00016250 mRNA upstream 13641 13597834 ~ 13617644 (+) True AMCG00016250
AMCG00016249 mRNA upstream 42312 13583044 ~ 13588973 (+) True AMCG00016249
AMCG00016242 mRNA upstream 175369 13445038 ~ 13455916 (+) True AMCG00016242
AMCG00016241 mRNA upstream 241668 13387962 ~ 13389617 (+) False AMCG00016241
AMCG00016239 mRNA upstream 384269 13212058 ~ 13247016 (+) True AMCG00016239
AMCG00016256 mRNA downstream 45197 13676994 ~ 13705883 (+) True AMCG00016256
AMCG00016255 mRNA downstream 75417 13707214 ~ 13714691 (+) True AMCG00016255
AMCG00016254 mRNA downstream 94574 13726371 ~ 13742178 (+) True AMCG00016254
AMCG00016253 mRNA downstream 144725 13776522 ~ 13783628 (+) True AMCG00016253
AMCG00016260 mRNA downstream 249009 13880806 ~ 13895173 (+) True AMCG00016260
TU15233 other upstream 3574 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 849421 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1759550 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 4032129 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 4039636 9559464 ~ 9591649 (+) True AMCG00016159
TU15237 other downstream 3645 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 805974 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 2852558 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 2852558 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 2852558 16484355 ~ 16486003 (+) False AMCG00016329

Expression Profile