RNA id: TU15237



Basic Information


Item Value
RNA id TU15237
length 560
RNA type TUCP
GC content 0.39
exon number 3
gene id G12351
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13635442 ~ 13637001 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAATGCCCAGATCCAGTACAGAGTGATGCTGATTTCCAACACTGTACAAAATGATATAACCTCTTGTGAAAAAAGACATACTTTTTCACATCTGTATCCCGGAGTAAATGAAATTAACACTTAtgaaaaaagacatacattttcacatctgTATCCCGGAGTGAAGTATACTCTCACTGTGGAAATGACCTcatgcaaacagaaaaaagtgatttcaaAAATGATTACTACTGctGCACGAGTCTATAATGCAGAGGCATACATTCAAGAGCTGTTTTTGCCCTCTTATGAGAATACATGTCGTCCAGAGTTTAAGAGCATGTCTGCAAAGTTCAGGAAGGAGATCGAAAAAAACCTTCCAAAGGAATTCCAGGCGTACATTAAGTCCAAAACAATGAGGCTGGTGATCAATGCTATTCGCAAAGGGAGTGTGATTGTTGTCTTTGACATAGTCACAGCCCTTGACGTCCCCAGCAACACTTCTAGCATTCAAAAAAGTTTCCTTAATGCTCTACAAAAATCTACTCTTGCAGTGGATCTAAAACGGACACATATTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15215 lncRNA upstream 83584 13551594 ~ 13551858 (+) True G12331
TU15214 lncRNA upstream 88844 13546399 ~ 13546598 (+) True G12330
TU15170 lncRNA upstream 161657 13473488 ~ 13473785 (+) True G12289
TU15146 lncRNA upstream 245806 13352208 ~ 13389636 (+) False AMCG00016241
TU15144 lncRNA upstream 258339 13271584 ~ 13377103 (+) True AMCG00016241
TU15231 lncRNA downstream 1301 13638302 ~ 13639588 (+) False G12347
TU15232 lncRNA downstream 1301 13638302 ~ 13639150 (+) True G12347
TU15258 lncRNA downstream 20392 13657393 ~ 13659659 (+) True G12368
TU15299 lncRNA downstream 192733 13829734 ~ 13830887 (+) True G12406
TU15406 lncRNA downstream 545604 14182605 ~ 14184686 (+) True G12487
AMCG00016250 mRNA upstream 17798 13597834 ~ 13617644 (+) True AMCG00016250
AMCG00016249 mRNA upstream 46469 13583044 ~ 13588973 (+) True AMCG00016249
AMCG00016242 mRNA upstream 179526 13445038 ~ 13455916 (+) True AMCG00016242
AMCG00016241 mRNA upstream 245825 13387962 ~ 13389617 (+) False AMCG00016241
AMCG00016239 mRNA upstream 388426 13212058 ~ 13247016 (+) True AMCG00016239
AMCG00016256 mRNA downstream 39993 13676994 ~ 13705883 (+) True AMCG00016256
AMCG00016255 mRNA downstream 70213 13707214 ~ 13714691 (+) True AMCG00016255
AMCG00016254 mRNA downstream 89370 13726371 ~ 13742178 (+) True AMCG00016254
AMCG00016253 mRNA downstream 139521 13776522 ~ 13783628 (+) True AMCG00016253
AMCG00016260 mRNA downstream 243805 13880806 ~ 13895173 (+) True AMCG00016260
TU15235 other upstream 3645 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 7731 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 853578 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1763707 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 4036286 9598815 ~ 9599156 (+) True G11660
TU15538 other downstream 800770 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 2847354 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 2847354 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 2847354 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 3479792 17116793 ~ 17121932 (+) True G13012

Expression Profile