RNA id: TU15263


Basic Information

Item Value
RNA id TU15263
length 2217
lncRNA type intronic
GC content 0.47
exon number 1
gene id G12373
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13657443 ~ 13659659 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNggcaaacgtacaaaatcaacaggggatcaaatacttttttccctcactgtaggtttATTGCTATCCTTACCCCCCAAACAACACGCGCCTTTATGTGGTACACACACATCTCAGTGCACCCTTTGAGGCATCAGCCtgatatttaagaaacaaaccaacacgTATGTCTTTGTTAGTGTTTAAGGTGTCGTCCAGCGTGCTGTAATGTGATGAAATGTTAGTCAGACTGCGTGAACATTGTCACCCTGCTTTCCAACACTGTAACTGAGCTTCTGTCAAGTGCCCAAACACCTGCCCTATTCCCGCCAATCCCCATCCTCTCTTTGCCTGCCTCCTTCCCCGTCCATCAGAATGTGCAACACCACTTTCCCCAATCCAGAGGCACCTGCGCTGCTTCGCCCGAAAAGTCATTTGTAGTTGCCTCTGTTTTCTGGACTTGGATTTATTGAATTGTAGGAAAGGTCACTCAAAGATTAGACTTAATGGAGGGTATCTGGTTCTGATAATTTGGTTGCTAAGAAACCAAGTGAGTTACAGTAATAAGATAACCTGTTACTGCATGTGAGGGTATTGCAGTGTAGTTTAGAgcttgcttttaaatgcatttcctgtcctataataataataataataatatgcccACTAAAGTAAATAAGTTGCTCACTTGATACCTAAACACTAtaatattactttaatattatCTCTCACACAAAGCTTTTCAATTGTACATTCAAAATCGACATCTCTAAAGCCTAAAACACGCAAAGAATGGTAGCATAAGTTAATTTCTTCAGAATCTGGATGGGTAATGATTCATGCATTAAGcaacaacaaaaggaaaatccCACAGACAACAGGCCTAAACAATAAACAGACAGTAAAATGATAATTTGAAGATGACGAAATATGCTGTTGAATTGAAAAGAAAGCCAAACGTATTGTTTTCTAGCAGGATCTGACAAGTTAACACATTCACACTGATTGTGAAGAGGATGTCAAAGTAGGAGTGACAATCGAGTAACAGAAATGCAAGGAGTATGAGAAAGCATCAGGAAGGTGGGAGTGCTCTGCGATGAACTCAGCCAGCTGAGTGCGTCTTCTCTTGGTAGCAGCATATGAAGAGTTATACCCTGAGGCCTTGGGAGCCCATCTGGGGCTCAGTAGACATCATCTGCCAAGCCTCATAGATCTGACAGCAGCAGCATGCTACAGGAGGCTGGCGGACAACTTGTCAAATAAACGGCATAACAAGCATAACATATACAGTGTATTAGAGAGGTCTAGAGGGCTTGGTGTCTAGGATCAAAAGCTTGGGGTTAAGCATttcatcttttttgtttttaaatttctttctttctttttattttgcagatattgtttataattcttctttattttgctgtattcaAATAGCCCTGTGGCCTAGTGGTAAagttgtatttactgtatttaatgctgtatttgtgtattgttttttttcagactgATATATTGTTGCTCTCAGGCCACGGGCTCCAGACTCCTTTCTTGGTGAAGGCAATTACTGTTAGGCACATGACATTTGAAAGTGATACTTTACAAATGCTTTGCAAATGCACCAACAAACGCTACACATACACCAAAACGAAGGTGTGTTTTGGATGACCACACCTTCTCTTGTTAATGAATAGCCAGATTTATATAAGATTGTGCCTCCCTGTTCATATGTGCAGATCTTATTCTTAACAATAGATGTCTGCTGTAGCTGACCACAGTTTCTTAGCATCAGAGGGGGGCTGAACCAGAACTGCGCTTCTGTACACAGTCTGAATTCACTCCACCATCAGAGGCCAGTATGACTGGGTAGATTACCCAACCAATGTATTCTGTGGGATTTGCATGGCATTTCATGACCTCCATTTTTCAGCACCAAACCTTTTGTTATAGTTGAACCCACCTGCTTGGGAGTGGCAGCTTATCTTCTTGTCTGTTTATCTGAGTCCTCACAGTCAAACCAGCCTCGAGCGACTGTGTCTCCAGGGGGTGAGAGCCGCCTAATTAATATTTTGCAGCTGTGGGCTTGTTGCGTATCACGGATTGTCCATGTAATGTGCTGAGCACACCACACTTGGTGCTATCTCCCATTCATGCTGTTAGTAtgagaattatttaaaaagaagacagaaaaaagtaatgtaCTGCAAATATTTGATTGTGACGTGCTTGTGTTCTCTG

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15247 lncRNA downstream 17853 13638303 ~ 13639590 (-) False G12358
TU15248 lncRNA downstream 17853 13638303 ~ 13639590 (-) False G12358
TU15246 lncRNA downstream 17853 13638697 ~ 13639590 (-) True G12358
TU15249 lncRNA downstream 18293 13627255 ~ 13639150 (-) True G12359
TU15219 lncRNA downstream 111725 13543348 ~ 13545718 (-) False AMCG00016246
TU15533 lncRNA upstream 760762 14420421 ~ 14427290 (-) False AMCG00016281
TU15536 lncRNA upstream 767966 14427625 ~ 14428817 (-) True G12585
TU15547 lncRNA upstream 771953 14431612 ~ 14436531 (-) True G12594
TU15548 lncRNA upstream 772059 14431718 ~ 14436531 (-) False G12594
TU15549 lncRNA upstream 772059 14431718 ~ 14436437 (-) False G12594
AMCG00016251 mRNA downstream 62292 13584907 ~ 13595151 (-) True AMCG00016251
AMCG00016245 mRNA downstream 74777 13562171 ~ 13582666 (-) True AMCG00016245
AMCG00016246 mRNA downstream 98632 13545139 ~ 13558811 (-) True AMCG00016246
AMCG00016247 mRNA downstream 114808 13535694 ~ 13542635 (-) True AMCG00016247
AMCG00016244 mRNA downstream 122468 13522174 ~ 13534975 (-) True AMCG00016244
AMCG00016257 mRNA upstream 170101 13829760 ~ 13840039 (-) True AMCG00016257
AMCG00016258 mRNA upstream 199674 13859333 ~ 13874048 (-) True AMCG00016258
AMCG00016259 mRNA upstream 215076 13874735 ~ 13879998 (-) True AMCG00016259
AMCG00016262 mRNA upstream 253263 13912922 ~ 13921956 (-) True AMCG00016262
AMCG00016263 mRNA upstream 276964 13936623 ~ 13936850 (-) True AMCG00016263
TU15220 other downstream 98259 13554585 ~ 13559184 (-) False AMCG00016246
TU15028 other downstream 786883 12862099 ~ 12870560 (-) False AMCG00016226
TU15027 other downstream 786883 12869840 ~ 12870560 (-) False AMCG00016226
TU15029 other downstream 794573 12862099 ~ 12862870 (-) False AMCG00016226
TU14856 other downstream 1328410 12323161 ~ 12329033 (-) True AMCG00016211
TU15638 other upstream 1130544 14790203 ~ 14791969 (-) False AMCG00016293
TU16024 other upstream 3198882 16858541 ~ 16861179 (-) True G12945
TU16025 other upstream 3198882 16858541 ~ 16861179 (-) False G12945
TU16027 other upstream 3198882 16858541 ~ 16861179 (-) False G12945
TU16556 other upstream 5431580 19091239 ~ 19105381 (-) True G13367

Expression Profile