RNA id: TU15406


Basic Information

Item Value
RNA id TU15406
length 2082
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G12487
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 14182605 ~ 14184686 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAGAATAgatatataatttgatttaatatagattagacTTCATTTGCATAAAAAGGAAACTGACTCAGCATTGAAAGTGAAGCAATaaagtggtggtggggggtgtgcgtgtgtgcgtggtTGTGTGTATCAGGACAAAAGGGATGAGAGGGTTGACTCAAGTTCGAGGTTTCGGTAGCAgttgagagagggagactgtTTTACggtccaaaacaaaacatccctgTCAGAGTATCACTGTGCTGAATGCATAAGCAAAAAAGACGCGTTTACAGAGCGGTTTTGACAAGCAAATCAAACAGGCTTTGAAGGGTATCGGAACCATATTACGGTTTGCCCGCAGGACAAAGCTTCacaaaaacttgtttttcttgagCACTAGCACAACAGGAATGCCGTACCGAGCGTGTGCTTCACACTAGCGGCTACAGAGGAGAGCAGCATGCCAtcttaataatattacattaatttgggGGCTTTTCTTAAACATCAGAATCATGTTACATGATTCCAAAAGACAATGTCAGAGATCGGGCTGTCGAATAGAGAAGTCAAACCGCAAAATAACCACTGCAATGTCAGGCAGGAAGCAATCACCTGAAGTCTGACTGTTTGACTAGAAACACACCCCgaactgaaataaaactgaaaaaaatgaaacctttgacttaattgtttaaaataatattgttccACGTGCATATCCATGGAAACGATAATCTCACAGCACACTGTCACTCTGCAGACAGCTCTGAGACACGATCAAGTGCTTAATGCGGTGAAGAGAGAAAAGACAGCCCCCGAGGCCGAGACAGGCTGGCTGTGTCCAGCGGGGGGTGATGCGGTCTGTCGGCCTTTGAGTAGTTACTCTCTCATATCTTGGTCGATGCCCTCTtcaggacacacagacagtacaGGACACTCTCTAGCTAAGCTGgcttccctttttatttttctctttcaaatgtatggatttaattcatttttttgctgttgttggggGGAGGTTATGTGGTTGGGTTTGCATAATGGAAGTGGGAAACATTCATTGTGATCAAACGCAAGGAAAGCCAAGCCTGTGCTCCCCCCTAGGCTGACCAGCTCACTCGCCTCTCCCTCCACTTCCTCTTTCTGATCAGACAAGAGGTTCTGTATCTTAATACGATCCATGAAAGCGGTGTGTTGTTTCATCAGGGCCTTTGACCTCAGCCAGCCCAGcagttgtgtgtttattctatATTTCTGGTCCAAATTCAAACCTGATTCTTTTTGAGTCTTTAGAAGTGTCCAAAATCCTTCCAAAAAGAGCAATGGGATAAAAATGACTTACACTGCAGTGTGTCATGTCCCCTTGTGTTCCCACGTGGCTCGGGCTGCCTGTGAATCACACCTCCAGAGTGAAGAGCCTCTGATAGATAAATAGAAAAGCAGGATCAAAATCACTTGTGAAGTAAAAGTTGTGGGTTTCCCAACTCATTGCTCTTGTAAAGTGGTTTGCAGtgcatacaaaaacaataaaaagctgGTCTATTTCCCAGATTCTATTGTGTCGTCCAGCTTTTCAATAAGCTCCCCTCCTCGGCAGTGGGCTTTATTGGGTGCCCGTGGGCGGAGGGGCGCACTCTCCCATCAGAGCACTGGCTGCTCCGGCCCTGAACTGCAGCAGGAAGGAGGATGCTGGGAGAGGtttagagaaaacaaaacagtggaGAAGACACCCAGAGCAAaggttaaaacaacaaaataaaaagaaatacaaatgacaatttatttttaagacaagACAAATTACATCAAGTTTAATTGTGCTGCACTTTAAAAAGGTAACGTTGGTACATCCCATTCTGCTGCATGTACCCCGGTCTGCCACCGGACTGAGAtcacctgtttttctctctagGCTGTGGGACACTGTGGGGTGCAGGTTTGTCTGTCTCTCGATGACCCTCCAACAGTTGTTGTCAATGTGTCTGTGCACGGGCAATGGAATGAAAGCATGCTTTGTACGAAAGCACAATAAttgtatagaaaacaaaaatgattacagtgccaattttttaaataaattgatatgTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15299 lncRNA upstream 351718 13829734 ~ 13830887 (+) True G12406
TU15258 lncRNA upstream 522946 13657393 ~ 13659659 (+) True G12368
TU15231 lncRNA upstream 543017 13638302 ~ 13639588 (+) False G12347
TU15232 lncRNA upstream 543455 13638302 ~ 13639150 (+) True G12347
TU15215 lncRNA upstream 630747 13551594 ~ 13551858 (+) True G12331
TU15409 lncRNA downstream 10249 14194935 ~ 14196634 (+) True G12489
TU15493 lncRNA downstream 199219 14383905 ~ 14384657 (+) True G12549
TU15511 lncRNA downstream 212563 14397249 ~ 14398414 (+) True G12566
TU15541 lncRNA downstream 264126 14448812 ~ 14449212 (+) True G12589
TU15543 lncRNA downstream 266824 14451510 ~ 14451754 (+) True G12591
AMCG00016270 mRNA upstream 5475 14176792 ~ 14177130 (+) True AMCG00016270
AMCG00016269 mRNA upstream 20177 14161493 ~ 14162428 (+) True AMCG00016269
AMCG00016265 mRNA upstream 98112 14069281 ~ 14084493 (+) True AMCG00016265
AMCG00016264 mRNA upstream 202160 13976780 ~ 13980445 (+) True AMCG00016264
AMCG00016261 mRNA upstream 228313 13949907 ~ 13954292 (+) True AMCG00016261
AMCG00016273 mRNA downstream 39202 14223888 ~ 14233628 (+) True AMCG00016273
AMCG00016272 mRNA downstream 73923 14258609 ~ 14264073 (+) True AMCG00016272
AMCG00016271 mRNA downstream 85631 14270317 ~ 14282590 (+) True AMCG00016271
AMCG00016279 mRNA downstream 111676 14296362 ~ 14298779 (+) True AMCG00016279
AMCG00016278 mRNA downstream 164286 14348972 ~ 14383679 (+) True AMCG00016278
TU15237 other upstream 545604 13635442 ~ 13637001 (+) True G12351
TU15235 other upstream 550808 13631285 ~ 13631797 (+) True G12349
TU15233 other upstream 554894 13621879 ~ 13627711 (+) True G12348
TU14996 other upstream 1400741 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 2310870 11868825 ~ 11871735 (+) True G11921
TU15538 other downstream 253085 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 2299669 16484355 ~ 16486003 (+) True AMCG00016329
TU15938 other downstream 2299669 16484355 ~ 16485148 (+) False AMCG00016329
TU15942 other downstream 2299669 16484355 ~ 16486003 (+) False AMCG00016329
TU16114 other downstream 2932107 17116793 ~ 17121932 (+) True G13012

Expression Profile